G399016 (LOC102218968)


Basic Information

Item Value
gene id G399016
gene name LOC102218968
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2262604 ~ 2347812 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU473376
ATCTGTTTAAGCTCTAGGTTAAGTACTACTCTGAACCTGTTGTGCCTTTTATCCGGTATAAGAAAAATACTGtacaaaaagacaaacatagAACTCTAgaatattcagtataaacattAACATCTCTGTTTTAACCAATATAGCTCTGTTAttagtgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccacacgTTTTGGTCTGTAGTAAACAAACTGATTGCGTTAGCCATGCTAATCACAGACAACATCATCCAGCCATCTCTTtaacaggaagaaaaaacaaaacaaggaaataaacagaaaaacacagcatacattcagtacattcagcaCAGCCATCTGAGAAAGATATCGAGAGGGCCGAGGTAAAGCTACGACAGAAGACTATACACGTCTGTACAGGAAACAAAAACACCCTACAGAAAGCTCAgagtattaaataaaagtataaactGGTTTGTGCgggaagaagaaataaaattactGTATTTTCCAGACTACAAGTCGCTCCAAAGTCTGCATTGTATtagcatatactgtatctatGTTTGTATTTATACGCTAACTTCTGCCTTGATAGCttagctattagctagctagtaattTTTGTGAGAGTTGTTTGGATAGCAGTCCATCTTtgttatgctagctagctagagagCTAGCTTATTCAACATAAAAATGGAACAGTTACACAATTctattaatgagaaaaaaaaaatcaattcatttCAGTCTAGTGTTAGCGAACTTTTTCATCGTCTTGCGATATCGAACAGCAAGCTAGCTTAAAGCACTAGTTTAGCTAGTTCATGGCGGCTCACCTGCCGATCAGACACCATAATGAATACGCTGCTAAAAATGGCGTTTTATAGTCCAGAGAATACGGTAGCTTCATGTTCATGCATCGAAAATAAAAGCAGATCAGGATAATTACAAGAAAGATAACAGGAATATAATAAGAGTAATAATTAATAGCTGCGAAGTAGTTCTCAgattcaaaataaaaaccaaaacagtCCATAAATAGATCGGATTTCTGTTATAGAAGGTAGACTCGCACCCAGATCGGATTGTGAAAGACGCTTTAGTGCAGGTTGTtagcagagacacagagagagacagacagagaggaagagaagtgTGTTAGCATGAATTCACATGTGCATTCATTAGCAAATTAGCCGTGCGCTCTGAGGGGAGGCGTCTGCGTAAACGTGAAGCGTAGATGCCGCTGCTTTTATTTAGCAACAGTAAAGCTAGCTCGGTTTGCATCGGTTTGATCTGCTCTGGAAACACTGATTATAACGTTTATAATATCTTATAGAAGTGTTTACCAAAGCTAGCATAACCGCAATGTTGTTAGCtaaaataaacagctaaaatacTTGAGAAAATGAATGACGAGGGGTTTTCATTGGATGTGGAGTTAAAGATTAGCTAAGTAACTAGCTAAATATGatgaaaacaatattttgttatgaaaatataaatagctagctagctaacagcactatatactgtatagccAGCTGGCTAGCAATGGAGCAGCTGCaagatttttatgatttttagcTGTAAGAGTTTAATTTGTATGGAAGTAAACAATAAGCAATAAGCTAGTCTTGCTAATGATTAGCTAAGCCATTTGTAATAAATAGCTCAACACACTCAGCATTAAAATAAGCGTCATAGCAACCGgacacagacaggaagtgaaattACGTagctaatatttattaaatgattaaaatcgTAACTTTATTGATTGTCCTCGTAATCGCAACTCACAAACTTCCACAGGAAATTAGCTCTGTTGCTAGTTAGTGTGAATGCATGGTTTATAAatctatttcacacacacacacacacacacacacacacaatatgctATGAACCagatgatagagagagaaagaacgagTCGGCTAGCACTACTTTCTTGGTTCTTTTCCTGAAAAGTGTGTTGGAGTTATTGCTCTCTGAGTGGATGAGGCatgaaattcaaaataaaaaaataaaaaatgaaaagacgCTGGTGTGTGTTAGCACGATGAGAAGCGAAAGAAGCAAGACCAGACAGaaatgtcagagagagagagagagagagagagagagagagaaaagaaagagaagcaaGCATACAGCACCACTTTCCAATGAAAATCAGGAGTccagaaaggaaagaaaagaaagaataaatgtgaCAGAGAGCAAGCGCTAATGTGCGCTAATGCCCGTCACACACCGCTaaaacatagagagagagagagagagggagagagacggatggag
>TU473377
cctcgTCGTGGTGGAAGGGCAGCTTCATGGGGTTCTCCAGCAGGGATTTAAGGACTCCGTGGGTCGGAGGAAGGAAAGCGGAGTTGACGGGCCGCGACATTTTCTCCATCGCTGCGCGCGAGCGACACGGTTTAATCCTCcgggaaaaataataataataataataataataataataaaaaaaaaaaaaaagaaaaagaaaaacttgacAGAAGAAAAGAGGTTTCCTAACCGAATATGAAGACGAGCGAGTGTCCGATATCCTCCGCAGCTGGTCTGTTTGACGTATAATTCCATGGAAATTAATTTGTCTCTATAAATGTCCACAAagtacacaaaaaaaagcaaaaatgtgcGCTCCACATAACAAAATACTGCATATCTCACTGTgtgatcctgtgtgtgtttgagggctTAGCTGCCAGAAAGAGTTGATCCCTTTAGTTGACAAATAAAGCTATAAACtacgcaaaacacacacacacacacacacacacacaccctctctgtCGTCAGGTTGTCGGTCGTCTCTGGTGAGTCGTGTTACAGATGAGCTGCCGAGGTGCGGAATGTGGAGGAGACGCTGGACACAACGCAGACACGAGCTGAACTCCTGATTCTGGTGGAAAtcacgtgcgtgtgtgtgtgtttgtaccatctcactcactttctctctcacacacacacacacacacacacacacacacacacaggcaagtGAGTACAGACAGGTGAGCTCAGATCACAGGTGtagtctgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagagctggGCGACATGATGACATGATCCTAACGTTGCTGTAAATTACATCATAACACACTTTTCTCAGCTTCTGGGAGAAAAACCGAAAGAGAAGGAGagttagagagtgagagagagaaaaagaaagaggaatgaGATGCAAGACAAAGAAGGGGAGAGAAgggtgaaagaaagagagagggaaagggcgcgagagagagagagagagagacggatggag
>TU473379
ACAAACATtgatcttttttcttctttttgcatACTTACATCCTCGGGAACACGTACAATCAAACCTGTGAATAGACCGGAGCAATCCGGCTAAACCAACGAAACCACATTGAGCCAGGGATGGAAAACCTGCAGGctagtgggcggagcttaaatcCCAAACAGCAACTCTTGTGTCCTTATATGGACTCAAAGCCACGCCTACTGTCACTGAGCCTGTTACGGAGAAGCATTATGAGCAGGGAGGAATAACGACGACAACGAGATGCAGATGTGGAATTTTTGCCAGCTGCCGTCTTCAGTTCCCGGCTCAggtgtgtttattgttattagCACGTTAGCTGCAGCATCAGAACTCTGTAAAATCACATCTCGCATCTTTTACATATGAAAGTATGAAAACTTAGGTGCAAGAAAAAAGGCTCGGACTCGACAGGATGAAAACGAACActtattccatatatatatatttcttaaaaaaaaaaaaaaaaaaaagaaaaagaaaaacttgacAGAAGAAAAGAGGTTTCCTAACCGAATATGAAGACGAGCGAGTGTCCGATATCCTCCGCAGCTGGTCTGTTTGACGTATAATTCCATGGAAATTAATTTGTCTCTATAAATGTCCACAAagtacacaaaaaaaagcaaaaatgtgcGCTCCACATAACAAAATACTGCATATCTCACTGTgtgatcctgtgtgtgtttgagggctTAGCTGCCAGAAAGAGTTGATCCCTTTAGTTGACAAATAAAGCTATAAACtacgcaaaacacacacacacacacacacacacacaccctctctgtCGTCAGGTTGTCGGTCGTCTCTGGTGAGTCGTGTTACAGATGAGCTGCCGAGGTGCGGAATGTGGAGGAGACGCTGGACACAACGCAGACACGAGCTGAACTCCTGATTCTGGTGGAAAtcacgtgcgtgtgtgtgtgtttgtaccatctcactcactttctctctcacacacacacacacacacacacacacacacacacaggcaagtGAGTACAGACAGGTGAGCTCAGATCACAGGTGtagtctgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagagctggGCGACATGATGACATGATCCTAACGTTGCTGTAAATTACATCATAACACACTTTTCTCAGCTTCTGGGAGAAAAACCGAAAGAGAAGGAGagttagagagtgagagagagaaaaagaaagaggaatgaGATGCAAGACAAAGAAGGGGAGAGAAgggtgaaagaaagagagagggaaagggcgcgagagagagagagagagagagagagagagagagagggagagagagagag
>TU473380
ACAAACATtgatcttttttcttctttttgcatACTTACATCCTCGGGAACACGTACAATCAAACCTGTGAATAGACCGGAGCAATCCGGCTAAACCAACGAAACCACATTGAGCCAGGGATGGAAAACCTGCAGGctagtgggcggagcttaaatcCCAAACAGCAACTCTTGTGTCCTTATATGGACTCAAAGCCACGCCTACTGTCACTGAGCCTGTTACGGAGAAGCATTATGAGCAGGGAGGAATAACGACGACAACGAGATGCAGATGTGGAATTTTTGCCAGCTGCCGTCTTCAGTTCCCGGCTCAggtgtgtttattgttattagCACGTTAGCTGCAGCATCAGAACTCTGTAAAATCACATCTCGCATCTTTTACATATGAAAGTATGAAAACTTAGGTGCAAGAAAAAAGGCTCGGACTCGACAGGATGAAAACGAACActtattccatatatatatatttcttaaaaaaaaaaaaaaaaaaaagaaaaagaaaaacttgacAGAAGAAAAGAGGTTTCCTAACCGAATATGAAGACGAGCGAGTGTCCGATATCCTCCGCAGCTGGTCTGTTTGACGTATAATTCCATGGAAATTAATTTGTCTCTATAAATGTCCACAAagtacacaaaaaaaagcaaaaatgtgcGCTCCACATAACAAAATACTGCATATCTCACTGTgtgatcctgtgtgtgtttgagggctTAGCTGCCAGAAAGAGTTGATCCCTTTAGTTGACAAATAAAGCTATAAACtacgcaaaacacacacacacacacacacacacacaccctctctgtCGTCAGGTTGTCGGTCGTCTCTGGTGAGTCGTGTTACAGATGAGCTGCCGAGGTGCGGAATGTGGAGGAGACGCTGGACACAACGCAGACACGAGCTGAACTCCTGATTCTGGTGGAAAtcacgtgcgtgtgtgtgtgtttgtaccatctcactcactttctctcactcacacacacacacacagtacacagtgTACACATCTCTCTACAGCCTGTACACCAAGgcgtgacctctgacctttgcCCTCTGCGTGCACGGCGCCGTTCTCCTGAGGCTGAGGGGCGTGTGGCGGTTTAGCAGCGCTGACGGGGATCTGATGGAGAACGTGGAGAGTCTGCATCAGCGTCTGAGGAGCAgccgaggaggaggaggacgaggagaaCATCACGGGTCTCTGAACCGCTATCAGCACCGGAGCACTGCTCACTGgagaacctacacacacacacacacacacacacacacacgtttatttatttatttacagtacacGTCCAGCATGACGTGTGTTCCGTGCTAGCCGAGGTTAGCGTGTAGCATGTACCGGGCGTGGCCTGTGCCAGATGAGCCTCCTGGATCACGGCCAGTTTCGGCTGTATGGCGGCGGCGGTGACAGGAGGCGGGGCAGGGGCGGAGTCTGTCTCCGAGGGAACGGGCGAGCCCTCTCGTGACAGGCTGTCAGGGGTCTGGACGCCGCTGGAGTGGGCGGAGAGAACGCCGGAATGGCTGGGTGACGCCGGGGCGCTCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473376 True 2301 lncRNA 0.38 2 2266690 2347812
TU473377 False 1019 lncRNA 0.46 3 2266690 2331691
TU473379 False 1341 lncRNA 0.44 3 2266306 2268036
TU473380 False 1563 lncRNA 0.50 3 2262604 2268036

Neighbor

gene id symbol gene type direction distance location
tmem220 tmem220 coding downstream 250612 2008006 ~ 2011992 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding downstream 255327 2003622 ~ 2007277 (-)
jmjd8 jmjd8 coding downstream 280048 1979258 ~ 1982556 (-)
LOC117596454 LOC108273013 coding downstream 292172 1962730 ~ 1970432 (-)
hspbp1 hspbp1,LOC107550267 coding downstream 311508 1934506 ~ 1951096 (-)
tmem100a tmem100 coding upstream 49604 2397416 ~ 2402161 (-)
cbx2 cbx2 coding upstream 151167 2498979 ~ 2507141 (-)
LOC113523971 LOC108272994 coding upstream 169979 2517791 ~ 2524179 (-)
LOC113523961 LOC108272987,LOC106591917 coding upstream 566222 2914034 ~ 3079229 (-)
si:ch211-108d22.2 LOC108272973 coding upstream 731422 3079234 ~ 3112252 (-)
trnad-guc_31 NA non-coding downstream 14373 2248160 ~ 2248231 (-)
G398953 NA non-coding downstream 221681 2040301 ~ 2040923 (-)
G398935 NA non-coding downstream 229972 2031168 ~ 2032632 (-)
G398942 NA non-coding downstream 263923 1998086 ~ 1998681 (-)
G398925 NA non-coding downstream 303042 1956046 ~ 1959562 (-)
G399118 NA non-coding upstream 198652 2546464 ~ 2547110 (-)
G399245 NA non-coding upstream 361145 2708957 ~ 2709168 (-)
G399252 NA non-coding upstream 375509 2723321 ~ 2723543 (-)
G399300 NA non-coding upstream 454601 2802413 ~ 2802629 (-)
G399316 NA non-coding upstream 478020 2825832 ~ 2826047 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 381546 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 670870 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 746290 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 800534 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 944968 1276278 ~ 1317636 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 7097 2354909 ~ 2377631 (-)
G399028 NA other upstream 24484 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 613901 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 669478 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 799487 3147299 ~ 3196563 (-)

Expression


Co-expression Network