G399054 (hlf,LOC102226672,LOC103365050,LOC103481883,LOC107089311)


Basic Information

Item Value
gene id G399054
gene name hlf,LOC102226672,LOC103365050,LOC103481883,LOC107089311
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2343971 ~ 2345042 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU473427
agagaaagacagagacagagtagagagaaagacagaaagacaaagagacagggagagagataaAGGCAGATATACAGTCAAAAAGTGAggcagacagaaggagagagacagagagagacagagagagaaagacagagagagagagagagggagagagacagaggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagatggagaaagagggagagagagagagagagagagggagagagagagagagagagagagggagagagagagagggagagagagatagatggcttgctcattaaggataaattcatgaaattaaaatgtatatcctgagtttatatatttctgtaaagctgcgtTGTGACAGTGTCTGTTGTCCGtggttaaaagcgctatataaataaactgaattagAGTTAAACTCGACGTGGTCTTCCGCCTTTAGCCTCGATGTTTGATGTactgtgcatgctgagatgcttttctgctcaccacagttgtaaagagtaactgcagcctttctgtcagctcgaaacTGTGTTGCGTACGTTGTGTTGTGGTGATATATATTGTATTGCGTACGCtgtttttaatgtaatgaaataaacacacagcgtCATGATTACTGgctgtgtctgtatgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaccttcaGGTCTTCAGGGATGAAGACTTTGCGTGCTTTTTTGATCATGGGCTGAGGTTTGAGCTCCTCCATGCTGAACTTGCGCTTGCGTGGGTCGAACATCTCCTGACCCGGAACGCTGGACAGAGCCAGGTCTGCCGGGTCGGGCTCGTAACTCACCGGCACCTGGATGGACTCGGGGTCGATCGGACTCGGGGTGTTACGGCTCGACGGCAggcctgagacacacacacacacac

Function

symbol description
hlf Enables DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473427 True 976 lncRNA 0.47 2 2343971 2345042

Neighbor

gene id symbol gene type direction distance location
tmem220 tmem220 coding downstream 331979 2008006 ~ 2011992 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding downstream 336694 2003622 ~ 2007277 (-)
jmjd8 jmjd8 coding downstream 361415 1979258 ~ 1982556 (-)
LOC117596454 LOC108273013 coding downstream 373539 1962730 ~ 1970432 (-)
hspbp1 hspbp1,LOC107550267 coding downstream 392875 1934506 ~ 1951096 (-)
tmem100a tmem100 coding upstream 52374 2397416 ~ 2402161 (-)
cbx2 cbx2 coding upstream 153937 2498979 ~ 2507141 (-)
LOC113523971 LOC108272994 coding upstream 172749 2517791 ~ 2524179 (-)
LOC113523961 LOC108272987,LOC106591917 coding upstream 568992 2914034 ~ 3079229 (-)
si:ch211-108d22.2 LOC108272973 coding upstream 734192 3079234 ~ 3112252 (-)
trnad-guc_31 NA non-coding downstream 95740 2248160 ~ 2248231 (-)
G398953 NA non-coding downstream 303048 2040301 ~ 2040923 (-)
G398935 NA non-coding downstream 311339 2031168 ~ 2032632 (-)
G398942 NA non-coding downstream 345290 1998086 ~ 1998681 (-)
G398925 NA non-coding downstream 384409 1956046 ~ 1959562 (-)
G399118 NA non-coding upstream 201422 2546464 ~ 2547110 (-)
G399245 NA non-coding upstream 363915 2708957 ~ 2709168 (-)
G399252 NA non-coding upstream 378279 2723321 ~ 2723543 (-)
G399300 NA non-coding upstream 457371 2802413 ~ 2802629 (-)
G399316 NA non-coding upstream 480790 2825832 ~ 2826047 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 462913 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 752237 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 827657 1462119 ~ 1516314 (-)
LOC117596459 NA other downstream 881901 1457832 ~ 1462070 (-)
LOC117596427 NA other downstream 1026335 1276278 ~ 1317636 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other upstream 9867 2354909 ~ 2377631 (-)
G399028 NA other upstream 27254 2372296 ~ 2426606 (-)
G399490 nup85,LOC106601803 other upstream 616671 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 672248 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 802257 3147299 ~ 3196563 (-)

Expression


Co-expression Network