G399316


Basic Information

Item Value
gene id G399316
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2825832 ~ 2826047 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU473706
tatatataaaatcagagCTTCCACTAGGAATTTTTGGTGCCAGTCATGGTGTCCGGGAACGATGGTTTACTGGATAAATGAGTTTAATTGCAGTCATATGTTAATTTCTACTGCTGCaagaaaactgaaattttgGGCTGTACACGAATGACACATCAAGTTAAGTTAATGTGTAACTGTTTTTTGCCACACAGTcaacatgtaaataaacataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473706 True 216 lncRNA 0.35 1 2825832 2826047

Neighbor

gene id symbol gene type direction distance location
LOC113523971 LOC108272994 coding downstream 301653 2517791 ~ 2524179 (-)
cbx2 cbx2 coding downstream 318691 2498979 ~ 2507141 (-)
tmem100a tmem100 coding downstream 423671 2397416 ~ 2402161 (-)
tmem220 tmem220 coding downstream 813840 2008006 ~ 2011992 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding downstream 818555 2003622 ~ 2007277 (-)
LOC113523961 LOC108272987,LOC106591917 coding upstream 87987 2914034 ~ 3079229 (-)
si:ch211-108d22.2 LOC108272973 coding upstream 253187 3079234 ~ 3112252 (-)
LOC113525116 LOC100526730,LOC108272815,LOC108280069,LOC108279574,LOC108280065 coding upstream 292288 3118335 ~ 3295290 (-)
trnay-gua_7 NA coding upstream 343287 3169334 ~ 3169421 (-)
LOC117595704 NA coding upstream 352470 3178517 ~ 3188087 (-)
G399300 NA non-coding downstream 23203 2802413 ~ 2802629 (-)
G399252 NA non-coding downstream 102289 2723321 ~ 2723543 (-)
G399245 NA non-coding downstream 116664 2708957 ~ 2709168 (-)
G399118 NA non-coding downstream 278722 2546464 ~ 2547110 (-)
G399016 LOC102218968 non-coding downstream 478020 2262604 ~ 2347812 (-)
G399328 LOC108433502 non-coding upstream 33698 2859745 ~ 2860121 (-)
G399332 NA non-coding upstream 38650 2864697 ~ 2864936 (-)
G399336 NA non-coding upstream 48795 2874842 ~ 2875076 (-)
G399348 NA non-coding upstream 72561 2898608 ~ 2902751 (-)
G399491 NA non-coding upstream 131189 2957236 ~ 3046512 (-)
G399028 NA other downstream 399226 2372296 ~ 2426606 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 448201 2354909 ~ 2377631 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 944774 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 1234098 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 1309518 1462119 ~ 1516314 (-)
G399490 nup85,LOC106601803 other upstream 135666 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 191243 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 321252 3147299 ~ 3196563 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 398018 3224065 ~ 3234324 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 1294350 4120397 ~ 4132922 (-)

Expression


Co-expression Network