G399332


Basic Information

Item Value
gene id G399332
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2864697 ~ 2864936 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU473722
ctcacattgatttgtacattcttgttaaaggtgcttccggtACAAtcggcttcccttcttcctttcatctgacaagctttcatattttaaggaaaaaattatattcctgaaaagtatcctttgccatgtccactgatgagtcgttaacactactgtagtaactaggaagtggaattttatgtggcagACACAGACGAGCTGAGTGATACACACAGGGAAACATCCCAGCGCGGTTATAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473722 True 240 lncRNA 0.40 1 2864697 2864936

Neighbor

gene id symbol gene type direction distance location
LOC113523971 LOC108272994 coding downstream 340518 2517791 ~ 2524179 (-)
cbx2 cbx2 coding downstream 357556 2498979 ~ 2507141 (-)
tmem100a tmem100 coding downstream 462536 2397416 ~ 2402161 (-)
tmem220 tmem220 coding downstream 852705 2008006 ~ 2011992 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding downstream 857420 2003622 ~ 2007277 (-)
LOC113523961 LOC108272987,LOC106591917 coding upstream 49098 2914034 ~ 3079229 (-)
si:ch211-108d22.2 LOC108272973 coding upstream 214298 3079234 ~ 3112252 (-)
LOC113525116 LOC100526730,LOC108272815,LOC108280069,LOC108279574,LOC108280065 coding upstream 253399 3118335 ~ 3295290 (-)
trnay-gua_7 NA coding upstream 304398 3169334 ~ 3169421 (-)
LOC117595704 NA coding upstream 313581 3178517 ~ 3188087 (-)
G399328 LOC108433502 non-coding downstream 4576 2859745 ~ 2860121 (-)
G399316 NA non-coding downstream 38650 2825832 ~ 2826047 (-)
G399300 NA non-coding downstream 62068 2802413 ~ 2802629 (-)
G399252 NA non-coding downstream 141154 2723321 ~ 2723543 (-)
G399245 NA non-coding downstream 155529 2708957 ~ 2709168 (-)
G399336 NA non-coding upstream 9906 2874842 ~ 2875076 (-)
G399348 NA non-coding upstream 33672 2898608 ~ 2902751 (-)
G399491 NA non-coding upstream 92300 2957236 ~ 3046512 (-)
G399496 NA non-coding upstream 128904 2993840 ~ 2999456 (-)
G399494 NA non-coding upstream 146931 3011867 ~ 3070268 (-)
G399028 NA other downstream 438091 2372296 ~ 2426606 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 487066 2354909 ~ 2377631 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 983639 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 1272963 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 1348383 1462119 ~ 1516314 (-)
G399490 nup85,LOC106601803 other upstream 96777 2961713 ~ 2964157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 152354 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 282363 3147299 ~ 3196563 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 359129 3224065 ~ 3234324 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 1255461 4120397 ~ 4132922 (-)

Expression


Co-expression Network