G399490 (nup85,LOC106601803)


Basic Information

Item Value
gene id G399490
gene name nup85,LOC106601803
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2961713 ~ 2964157 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU473971
ATCTGTAAGATCATGGCTAAAAGGGCTCTCAGTAATAACAGACTGGGTTCTGCTCTCTCCTGGAGTATCAGAGCTAAAGATGCAGCCTTCGCCACACTCATCTCTgagagGTTTCTGCAGGATTACTGCACACGCGGCTCGTTCTCTGATCTGGATCTGATCGATAACCTCGGACCTGCCATGCTCCTCAGCGACAGACTCACATTCCTcgggaagtACCGTGAGTTCCACCGGCTGTACGGAGAGAAGAAGTTCACAGATGCAGCGAAGCTCCTGCTCTCCCTCATGACAGCAAAGATCGCTCCTCGCAGCTTCTGGATGACTCTGCTCATAGACGCCCTGCCCTTACTGGAGCAAAaagaggtgatcTTTTCAGTGGATCAGACCCATGAACTCATGTTCTGTCTGGAAGAGCTGACCTCTGACAACAGCAAGCT

Function

symbol description
nup85 Predicted to be a structural constituent of nuclear pore. Predicted to be involved in nephron development; nucleocytoplasmic transport; and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within mRNA transport and protein transport. Predicted to be located in nuclear membrane. Predicted to be part of nuclear pore outer ring. Is expressed in ovary. Human ortholog(s) of this gene implicated in nephrotic syndrome type 17. Orthologous to human NUP85 (nucleoporin 85).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473971 True 437 TUCP 0.51 4 2961713 2964157

Neighbor

gene id symbol gene type direction distance location
LOC113523971 LOC108272994 coding downstream 437534 2517791 ~ 2524179 (-)
cbx2 cbx2 coding downstream 454572 2498979 ~ 2507141 (-)
tmem100a tmem100 coding downstream 559552 2397416 ~ 2402161 (-)
tmem220 tmem220 coding downstream 949721 2008006 ~ 2011992 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding downstream 954436 2003622 ~ 2007277 (-)
si:ch211-108d22.2 LOC108272973 coding upstream 115077 3079234 ~ 3112252 (-)
LOC113525116 LOC100526730,LOC108272815,LOC108280069,LOC108279574,LOC108280065 coding upstream 154178 3118335 ~ 3295290 (-)
trnay-gua_7 NA coding upstream 205177 3169334 ~ 3169421 (-)
LOC117595704 NA coding upstream 214360 3178517 ~ 3188087 (-)
jpt1b hn1 coding upstream 242751 3206908 ~ 3222780 (-)
G399348 NA non-coding downstream 58962 2898608 ~ 2902751 (-)
G399336 NA non-coding downstream 86637 2874842 ~ 2875076 (-)
G399332 NA non-coding downstream 96777 2864697 ~ 2864936 (-)
G399328 LOC108433502 non-coding downstream 101592 2859745 ~ 2860121 (-)
G399316 NA non-coding downstream 135666 2825832 ~ 2826047 (-)
G399496 NA non-coding upstream 29683 2993840 ~ 2999456 (-)
G399494 NA non-coding upstream 47710 3011867 ~ 3070268 (-)
G399492 NA non-coding upstream 63541 3027698 ~ 3035655 (-)
G399532 NA non-coding upstream 203720 3167877 ~ 3168603 (-)
G399507 NA non-coding upstream 218815 3182972 ~ 3200751 (-)
G399028 NA other downstream 535107 2372296 ~ 2426606 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 584082 2354909 ~ 2377631 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 1080655 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 1369979 1565795 ~ 1591734 (-)
LOC113524069 LOC108261293,LOC108261210 other downstream 1445399 1462119 ~ 1516314 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other upstream 53133 3017290 ~ 3295273 (-)
LOC113525117 NA other upstream 183142 3147299 ~ 3196563 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 259908 3224065 ~ 3234324 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 1156240 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 1186742 4150899 ~ 4159750 (-)

Expression


Co-expression Network