G399494


Basic Information

Item Value
gene id G399494
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3011867 ~ 3070268 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU473983
TATCATTTCTTAACACATTACCTGTGAGACATTTTGAccttaatatatatttacactctTTCttctaaaacatttactgaaagTATTGTAGCATCACTTTAAGACCaaaaatctataatataaaTGTCAAACCATGATTTTAACTTTGAGAACTATGGGATGTTACCTGTGTCCACACGAGGGGTTTCCATTTTTAAAGTTCACATAAGGAGGATCCATAGATGCATCACTCTTCATGGAGACACAGCTGGGTGCTgctgagtctgatctctttctctgGAGTTTACTGCACAACATTCTGTGTGCACATGAAGGGTTTCCATTTTTAAAGTTCCAAGGAGGTTTTTTATGATGCTAACACTATGTATTTGTCTTATTCGATTGTATGTTTTCTATAATCTAATCATGTAGGAAATAACTGCAGAGAGGTTTATTATACCAGCGTGTCAGTGTCACAGTAATGTTGTTGGTTTTGATCTTACCCTGTATCTGTGATGATGTTCTTTTCCCTTCTGTCTTCTGACTTCTGTAGAACTCTGGGAACAAACAAATTGTAGATGTTAAAGACAATAACTTTAATCACTTTAATACTGTAGTGTAGCGCCGTCGTTCGGGTGGTGCAACTGGTGCGAGCGCGCCAGGCCCTGCCCTCTAGGTGGCCCTGGGGCCAGgggaaatatttataataattattttaaaaattaaattaaaaatcaaacatcCTGATTGATTTTCATGTTTTAGTTGATTTTATGAAATAAGACTTAATTCTAAAACATTATCCGAGCTACATAAGgcacactgttttatttctttctttcttttttttttttttaagtgtgtgaCGCTGCTTTGTGCAGCACGGACGGAATTGGATTTGCTCATTGAAATTCTAgttgtgtgtatttgatttATGTGTATTTGACTGTAGTAGTACTAAACATCATATACAAGATTTGGTCTTAAGATGACAGAAATGAGTGCTAATTAGGGCCCCGCATCCTCTAACTTGCACTGGGCCCTGCCCCATGCCTGCCATGGCCCTGCTGTAGTCTATACTTTAGCCCTAATTTTACTACAATAATCGTagtaagtgcattaatatttagaGAACACAGTGCTAAATACATCACCAACATTGTGgacctggagaaaaaaaatgtgcccATTTTAATTTTAGGGTTtcgagttttttttcttcctacaaTCCCCTCCGTAAGTATTTGAACGgcaatgaaaactgaaattctgatttattgtctcatcctcttcttttgatctcaaacacaaatgtcttcagtgtatagcaaaaaacaaaagaattggctttactgttccaatacttttggaggggactgtgcATGGTCATTAGGGATATAACAGAACATGAGTACttcattcagaatgaacagatcatgtgttctaaatggatgcaaatacagatacttattaattaaaaaagcctGCTAGAAACATTTGACCTTAAtaaatgtttacactgtttcatCTAAAGCTTTTACTGAAAGTATTATAGCAGCACTAAAGACCAAGTGACTATAATATAAATCAAAACAGCTGCTAATGATTGTGTAGCACAGCcattaactgtaactttaactgtGAGAACTATGGGATGTTACCTGGGTACAGATGAGGAGTTTCCATTTCGAAAGTTCGAAGGAGGCTCTATAGACGCATCACTCTTCATGGagacacagctgggttctggtgagtctgatctctttctctgttgttTACTGTACAACATTACAGGAAGTCCTTTATATACATCCTTTACAGTTTTTCACTGACTTGTTATTGgttgttttcattattttgttagTCATTACTATTAATTTTATTGTCACATCATGACACTGTGAAACACTGAACTGCACATTTACTGATATTCATTACTCTAAAATATTTAGTGAAAGTACTGTAGCAGCTTTAGGGCCTAATTAAAGTAAATCATAAACCAATAAATATCAAAATGCCGCAAATGACACAGGACTGGATAAAACAATGTGTAACAAGGCCTTTTGCCCTGCACTGACTTTAGCTATGAGAACTATGGGATGTTACCTGTGTGCACATGAAGGGTTTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU473983 True 2109 lncRNA 0.36 2 3011867 3070268

Neighbor

gene id symbol gene type direction distance location
LOC113523971 LOC108272994 coding downstream 487688 2517791 ~ 2524179 (-)
cbx2 cbx2 coding downstream 504726 2498979 ~ 2507141 (-)
tmem100a tmem100 coding downstream 609706 2397416 ~ 2402161 (-)
tmem220 tmem220 coding downstream 999875 2008006 ~ 2011992 (-)
mrps7 mrps7,LOC108262546,LOC107724659,LOC107579769 coding downstream 1004590 2003622 ~ 2007277 (-)
si:ch211-108d22.2 LOC108272973 coding upstream 8966 3079234 ~ 3112252 (-)
LOC113525116 LOC100526730,LOC108272815,LOC108280069,LOC108279574,LOC108280065 coding upstream 48067 3118335 ~ 3295290 (-)
trnay-gua_7 NA coding upstream 99066 3169334 ~ 3169421 (-)
LOC117595704 NA coding upstream 108249 3178517 ~ 3188087 (-)
jpt1b hn1 coding upstream 136640 3206908 ~ 3222780 (-)
G399496 NA non-coding downstream 12411 2993840 ~ 2999456 (-)
G399348 NA non-coding downstream 109116 2898608 ~ 2902751 (-)
G399336 NA non-coding downstream 136791 2874842 ~ 2875076 (-)
G399332 NA non-coding downstream 146931 2864697 ~ 2864936 (-)
G399328 LOC108433502 non-coding downstream 151746 2859745 ~ 2860121 (-)
G399532 NA non-coding upstream 97609 3167877 ~ 3168603 (-)
G399507 NA non-coding upstream 112704 3182972 ~ 3200751 (-)
G399537 NA non-coding upstream 115568 3185836 ~ 3194908 (-)
G399530 NA non-coding upstream 165375 3235643 ~ 3249326 (-)
G399541 NA non-coding upstream 173289 3243557 ~ 3245044 (-)
G399490 nup85,LOC106601803 other downstream 47710 2961713 ~ 2964157 (-)
G399028 NA other downstream 585261 2372296 ~ 2426606 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 634236 2354909 ~ 2377631 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 1130809 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 1420133 1565795 ~ 1591734 (-)
LOC113525117 NA other upstream 77031 3147299 ~ 3196563 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 153797 3224065 ~ 3234324 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 1050129 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 1080631 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 1224948 4295216 ~ 4338427 (-)

Expression


Co-expression Network