LOC113525117


Basic Information

Item Value
gene id LOC113525117
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3147299 ~ 3196563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU473993
CTTGAGGACAGATTATCCTCCTGTGTCTTCCTGAATCAAACTGCGCagtttgtttttgctcttcATTCCTACATCTGATACAGTTTTCCTCTTCAGCTTCATAATCCATAATGTAACACCACACACTGCTACCATTTCGCACAATTTCGTCGTTTTATCCGAGTGTTACAGCGACAGTGAAACAGTTCCAGGAAAGAATGAGTCATCAAAGCAGAAAGCAACCACAAGAGGGTTAAAACAGGAAATGCTGCGCAGTAATACGACTACAACTCCGTCCAGTTGGGTTTGGCAAAACAATCCCCGCCCCCGACTCCTGACTCTGACCTGTGATTAGACAGATTTAGACAGCATGATCTCCTGCGTTATATGCGGGGACTCATATAACTCAAGAAAGCGGTCCACGGCTGTAATCACACTTTCTCATTTGATTGCAGGTGACTATGGTTCTGTTCTCCAAGTCTTGTGGTGAGCTTTACAAGGATGGTGTATACAACTACACCGCATCACCGGATTTCCTGCAGAGGGGGGACTGTGAGCACAGCTGGAAATCACATGATGGGACCGTGTTGGGCACTGAAAGTTCTCTGGTTCGTCATTACTGTGAGAGCGGGATTCGCTGCATTGTAAGGTGTCTTAATCCAAGCAATCTGatgatAACACCACCTCCATCGCAGTTCTCGTCGTGGTTGTCCTGATTGCAGTCCTGATTGGAGTCTTGTTCTACAAAAACCCAAGGTGGAGAGATGGAGTCAGAGATTGGTGGCAGAGATTGGTGCGTAGCTGCAGGCCACGAGCAGATGAGGAGAACCGcaTGAACCCTGGTGATGTGAGAGCTAACGGCTGTGTGAACGGTGAAGAAGCTCAAGCACTCAAAGACAACGTCACTACAGTTGATGAGAGCAGAGTCTCCGAGAGCGAGTGAGGATTACAGTTCAGAACCTCCGTCCTGTCTACTTCTGCCGTTTCAAATCTGCACTTTCTGTTTCTGCACTTTCGCTACACTTAAGCATTTCTAAATCCTAAGACCTTGCAATTATAGAGTGTGTAATTTTTCTGTAGGCCAAATTTTTAATCATGTCAAGtcagagaaaatattttttaacatcacatttttatacTTGTGTAGCAAACGTTTGGTGTAAAAGGGTATAGAGCTGCAAATTTTTAATCATGTCAAAgagaaaatcattttttatgtcaaatatttttatactttatagcAATATTTTGgtgtacaaatatatttttatatttattacttgGCATATAAATAACATCTTTGTAACATCAACTCATTTTTGCCAAAGAAAGGGAAGATAAAAATCCCACAAACCAGCCAAAAAAGCCAaagatttttttacacacttagtttcttttctgcatttaaaaacactATGTCCTGCACACTTGTTATGCTCTGCCCTTttcctgtgtgggtgtgtgtgtgtgtgggtgcgcaTGCATGTATACATAAATGTCATAAAC
>TU473994
CTTTGGCGACGCCATCTTTACTGGAACTGTTTCAGTGTCGCTGTAACACTCGGATAAAACGAGGAAATTGTGAGAAATGGTAGCAGTGTGTGGTGTTACAATGTGGATTATGAAGCTGAAGAGGAAAACTGTATCAGATGTAGGAATgaagagcaaaaacaaactGCGCAGTTTGATTCAGGAAGACACAGGAGGATAATCTGTCCTCAAGGTGACTATGGTTCTGTTCTCCAAGTCTTGTGGTGAGCTTTACAAGGATGGTGTATACAACTACACCGCATCACCGGATTTCCTGCAGAGGGGGGACTGTGAGCACAGCTGGAAATCACATGATGGGACCGTGTTGGGCACTGAAAGTTCTCTGGTTCGTCATTACTGTGAGAGCGGGATTCGCTGCATTGTAAGGTGTCTTAATCCAAGCAATCTGatgatAACACCACCTCCATCGCAGTTCTCGTCGTGGTTGTCCTGATTGCAGTCCTGATTGGAGTCTTGTTCTACAAAAACCCAAGGTGGAGAGATGGAGTCAGAGATTGGTGGCAGAGATTGGTGCGTAGCTGCAGGCCACGAGCAGATGAGGAGAACCGcaTGAACCCTGGTGATGTGAGAGCTAACGGCTGTGTGAACGGTGAAGAAGCTCAAGCACTCAAAGACAACGTCACTACAGTTGATGAGAGCAGAGTCTCCGAGAGCGAGTGAGGATTACAGTTCAGAACCTCCGTCCTGTCTACTTCTGCCGTTTCAAATCTGCACTTTCTGTTTCTGCACTTTCGCTACACTTAAGCATTTCTAAATCCTAAGACCTTGCAATTATAGAGTGTGTAATTTTTCTGTAGGCCAAATTTTTAATCATGTCAAGtcagagaaaatattttttaacatcacatttttatacTTGTGTAGCAAACGTTTGGTGTAAAAGGGTATAGAGCTGCAAATTTTTAATCATGTCAAAgagaaaatcattttttatgtcaaatatttttatactttatagcAATATTTTGgtgtacaaatatatttttatatttattacttgGCATATAAATAACATCTTTGTAACATCAACTCATTTTTGCCAAAGAAAGGGAAGATAAAAATCCCACAAACCAGCCAAAAAAGCCAaagatttttttacacacttagtttcttttctgcatttaaaaacactATGTCCTGCACACTTGTTATGCTCTGCCCTTttcctgtgtgggtgtgtgtgtgtgtgggtgcgcaTGCATGTATACATAAATGTCATAAAC
>TU473995
CAGATTGTCTGCCTTACTATATATagacaatatatatattgtctGCCTTACTCCATGACGAGGACTGTGAGCAGGCATGGTACAATGAGACTGGGGAATTTGTATCAGATGGACAACTTCATGCAAATCAGTCTAAGCACCATCTGGTTGTTGATgcaaacagagaaaatattaCAGTCTCTGAGTGCATCAAGCTTCAGCATCAGGTGACCTGTCATGGATCGAGTAAAGagTGGAAACACTTTTACCAAGTGAATAATGACACCAGCTCACCAGCTCCCATTACTGCACAGCAATCTCATCATCATCTCCGTCGTCATTCCCGTCATTCTGATTGGACTCCTGGTCTGGTGCTGCAAACAGCCAAGGCGGAGAGATGGAGTCAGAGATTGGTGCGTGGAGACCGGAGGAGATCTGAGTGTGGCCGCAGGCAACGAGCAGATGAGGAGAGCCGcaTGAACCCTGGTGATGTGAGAGCTAACGGCTGTGTGAACGGTGAAGAAGCTCAAGCACTCAAAGACAACGTCACTACAGATGATGAGAGCAGAGTCTCCGAGAGCGAGTGAGGATTACAGTTCAGAACCTCCGTCCTGTCTACTTCTGCCGTTTCAAATCTGCACTTTCTGTTTCTGCACTTTCGCTACACTTAAGCATTTCTAAATCCTAAGACCTTGCAATTATAGAGTGTGTAATTTTTCTGTAGGCCAAATTTTTAATCATGTCAAGtcagagaaaatattttttaacatcacatttttatacTTGTGTAGCAAACGTTTGGTGTAAAAGGGTATAGAGCTGCAAATTTTTAATCATGTCAAAgagaaaatcattttttatgtcaaatatttttatactttatagcAATATTTTGgtgtacaaatatatttttatatttattacttgGCATATAAATAACATCTTTGTAACATCAACTCATTTTTGCCAAAGAAAGGGAAGATAAAAATCCCACAAACCAGCCAAAAAAGCCAaagatttttttacacacttagtttcttttctgcatttaaaaacactATGTCCTGCACACTTGTTATGCTCTGCCCTTttcctgtgtgggtgtgtgtgtgtgtgggtgcgcaTGCATGTATACATAAATGTCATAAAC
>TU473997
CTTTGGCGACGCCATCTTTACTGGAACTGTTTCAGTGTCGCTGTAACACTCGGATAAAACGAGGAAATTGTGAGAAATGGTAGCAGTGTGTGGTGTTACAATGTGGATTATGAAGCTGAAGAGGAAAACTGTATCAGATGTAGGAATgaagagcaaaaacaaactGCGCAGTTTGATTCAGGAAGACACAGGAGGATAATCTGTCCTCAAGATCCAGTtga
>XM_034301637.1
atatattgtctGCCTTACTCCATGACGAGGACTGTGAGCAGGCATGGTACAATGAGCTCCACCTTTCTCGGATCTGAGTCAGTCCCCTGAAACCGGAATAACTTTCCTCCAACTGGAGTAAAGCGCGCATCAGCTCTCAGTCACCTCCACAAACTCCTGCTCAGCTGTCTGCTTTGCTTTGGAGCACTTTCGAAGGAAAAAAATCCGGTGAGAACTTTTGGTCAAAACAAAACCAATCATCAGCAACAAAACGTTCACAGGTGAGCGTGAGGTGGGACACCAGAGCTTCTTCACCACCCTCCCTGTAAACAACCTTCTCTGGTCGAGGTGTTTTCCTTTTGCGTCACAGAGAATGACTGTGCTGTTCTTTCTCCTCTGCTCTCAGTTGCTTCTTGTTGGTGGTGTTATGACTATTGTCATGGAGAAGAACATCACCTTGTCCTGCAAAAACATTTCTGCAGGAGATGGTTACACCTACCGAGTGTCACCTGATATATTGTCTGCCTTACTCCATGACGAGGACTGTGAGCAGGCATGGTACAATGAGACTGGGGAATTTGTATCAGATGGACAACTTCATGCAAATCAGTCTAAGCACCATCTGGTTGTTGATgcaaacagagaaaatattaCAGTCTCTGAGTGCATCAAGCTTCAGCATCATGTGACCTGTCATGGATCGAGTAAAGagTGGAAACACTTTTACCAAGTGAATAATGACACCAGCTCACCAGCTCCCATTACTGCACAGCAATCTCATCATCTTCTCCGTCGTCATTCCCGTCATTCTGCTTGGACTCCTGGTCTGGTGCTGCAAACAGCCAAGGCGGAGAGATGGAGTCAGAGATTGGTGCGTGGAGACCGGAGGAGATCTGAGTGTGGCCGCAGGCAACGAGCAGATGAGGAGAACCGcaTGAACCCTGGTGATGTGAGAGCTAACGGCTGTGTGAACGGTGAAGAAGCTCAAGCACTCAAAGACAACGTCACTACAGAGTATGAGTTACCCTTAACTTCTGCACGTAGATAAACAGGACTGAGGGAAATGAACAGTGCTAGATGGATGGTGATGAGTGAGGAGTCTCCGAGAGCGAGTGAGGATTACAGTGTCTACTTCTGCCGTTTCAAATCTGCACTTTATCTGTTTCTGCACTTCAGCATTTCTAAATCCTAAGACCTTGCAATTATAGAGCTGTAATTTTTCTGTAGGCcaaattttttaatcatgtcaaatcagagaaaatattttttaacgtcacatttttatactttttgtaGCAAAAGTTTGGTGTAAAAGGGTATAGGACTGC
>XM_034301638.1
aatatatatattgtctGCCTTACTCCATGACGAGGACTGTGAGCAGGCATGGTACAATGAGACTGGGGAATTTGTATCAGATGGACAACTTCATGCAAATCAGTCTAAGCACCATCTGGTTGTTGATgcaaacagagaaaatattaCAGTCTCTGAGTGCATCAAGCTTCAGCATCAGGTGACCTGTCATGGATCGAGTAAAGagTGGAAACACTTTTACCAAGTGAATAATGACACCAGCTCACCAGCTCCCATTACTGCACAGCAATCTCATCATCATCTCCGTCGTCATTCCCGTCATTCTGATTGGACTCCTGGTCTGGTGCTGCAAACAGCCAAGGCGGAGAGATGGAGTCAGAGATTGGTGCGTGGAGACCGGAGGAGATCTGAGTGTGGCCGCAGGCAACGAGCAGATGAGGAGAGCCGcaTGAACCCTGGTGATGTGAGAGCTAACGGCTGTGTGAACGGTGAAGAAGCTCAAGCACTCAAAGACAACGTCACTACAGTTGATGAGTGAGGAGTCTCCGAGAGCGACTCCCAGAATAAAAGCAGTCCTTCGAGCCGGATTCGAACCAGCGACCTAAGGATGACCATCTTACACACCTACAGTCCTCCGCTCTACCAACTGAGCTATCGAAGGAGTTCATGTTTAAAGCTCCACCTTTCTCGGATCTGAGTCAGTCCCCTGAAACCGGAATAACTTTCCTCCAACTGGAGTAAAGCGCGCATCAGCTCTCAGTCACCTCCACAAACTCCTGCTCAGCTGTCTGCTTTGCTTTGGAGCACTTTCGAAGGAAAAAAATCCGGTGAGAACTTTTGGTCAAAACAAAACCAATCATCAGCAACAAAACGTTCACAGGTGAGCGTGAGGTGGGACACCAGAGCTTCTTCACCACCCTCCCTGTAAACAACCTTCTCTGGTCGAGGTGTTTTCCTTTTGCGTCACAGAGAATGACTGTGCTGTTCTTTCTCCTCTGCTCTCAGTTGCTTCTTGTTGGTGGTGTTATGACTATTGTCATGGAGAAGAACATCACCTTGTCCTGCAAAAACATTTCTGCAGGAGATGGTTACACCTACCGAGTGTCACCTGATATATTGTCTGCCTTACTCCATGACGAGGACTGTGAGCAGGCATGGTACAATGAGACTGGGGAATTTGTATCAGATGGACAACTTCATGCAAATCAGTCTAAGCACCATCTGGTTGTTGATgcaaacagagaaaatattaCAGTCTCTGAGTGCATCAAGCTTCAGCATCATGTGACCTGTCATGGATCGAGTAAAGagTGGAAACACTTTTACCAAGTGAATAATGACACCAGCTCACCAGCTCCCATTACTGCACAGCAATCTCATCATCTTCTCCGTCGTCATTCCCGTCATTCTGCTTGGACTCCTGGTCTGGTGCTGCAAACAGCCAAGGCGGAGAGATGGAGTCAGAGATTGGTGCGTGGAGACCGGAGGAGATCTGAGTGTGGCCGCAGGCAACGAGCAGATGAGGAGAACCGcaTGAACCCTGGTGATGTGAGAGCTAACGGCTGTGTGAACGGTGAAGAAGCTCAAGCACTCAAAGACAACGTCACTACAGATGATGAGTGAGGAGTCTCCGAGAGCGAGTGAGGATTACAGTGTCTACTTCTGCCGTTTCAAATCTGCACTTTATCTGTTTCTGCACTTCAGCATTTCTAAATCCTAAGACCTTGCAATTATAGAGCTGTAATTTTTCTGTAGGCcaaattttttaatcatgtcaaatcagagaaaatattttttaacgtcacatttttatactttttgtaGCAAAAGTTTGGTGTAAAAGGGTATAGGACTGC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:1901265 nucleoside phosphate binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03015 mRNA surveillance pathway
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU473993 False 1485 lncRNA 0.42 7 3147299 3156012
TU473994 False 1262 lncRNA 0.41 7 3147299 3155016
TU473995 False 1129 lncRNA 0.40 8 3147299 3196563
TU473997 False 221 lncRNA 0.43 2 3154675 3155016
XM_034301637.1 False 1307 mRNA 0.46 12 3184229 3196530
XM_034301638.1 True 1835 mRNA 0.47 20 3184229 3196535

Neighbor

gene id symbol gene type direction distance location
si:ch211-108d22.2 LOC108272973 coding downstream 35047 3079234 ~ 3112252 (-)
LOC113523961 LOC108272987,LOC106591917 coding downstream 68070 2914034 ~ 3079229 (-)
LOC113523971 LOC108272994 coding downstream 623120 2517791 ~ 2524179 (-)
cbx2 cbx2 coding downstream 640158 2498979 ~ 2507141 (-)
tmem100a tmem100 coding downstream 745138 2397416 ~ 2402161 (-)
jpt1b hn1 coding upstream 10345 3206908 ~ 3222780 (-)
LOC113534415 LOC108272862,LOC108272567,LOC100526730,LOC108272468,LOC108261103,LOC108280065,LOC108272463,LOC108279536 coding upstream 53523 3250086 ~ 3293868 (-)
gga3b gga3,LOC106606567 coding upstream 99356 3295919 ~ 3309397 (-)
trnae-cuc_42 NA coding upstream 114798 3311361 ~ 3311432 (-)
evplb LOC108272806 coding upstream 185551 3382114 ~ 3403530 (-)
G399494 NA non-coding downstream 77031 3011867 ~ 3070268 (-)
G399491 NA non-coding downstream 100787 2957236 ~ 3046512 (-)
G399492 NA non-coding downstream 111644 3027698 ~ 3035655 (-)
G399496 NA non-coding downstream 147843 2993840 ~ 2999456 (-)
G399348 NA non-coding downstream 244548 2898608 ~ 2902751 (-)
G399530 NA non-coding upstream 39080 3235643 ~ 3249326 (-)
G399541 NA non-coding upstream 46994 3243557 ~ 3245044 (-)
G399543 NA non-coding upstream 76993 3273556 ~ 3274842 (-)
LOC113534314 NA non-coding upstream 164108 3360671 ~ 3363611 (-)
LOC113534841 NA non-coding upstream 164319 3360882 ~ 3360954 (-)
G399490 nup85,LOC106601803 other downstream 183142 2961713 ~ 2964157 (-)
G399028 NA other downstream 720693 2372296 ~ 2426606 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 769668 2354909 ~ 2377631 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 1266241 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 1555565 1565795 ~ 1591734 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 27502 3224065 ~ 3234324 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 923834 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 954336 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 1098653 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 1401237 4597800 ~ 4635057 (-)

Expression


Co-expression Network