G399507


Basic Information

Item Value
gene id G399507
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3182972 ~ 3200751 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU474000
TTTATCTTCaggaactgctttattctgTCCAGAGGCGCATATAGATATAttcagaaataagaaataagatttTTCTGGTGTAACTGGAAGTCTTCCTGTGGAAAATGATCCGACAGGGGTGTGACTGAGTCCTGAGTCTTGAGTCTGATCTGTGATTGGACAGGATTAGACAGCATGATGTCTCGCGTTATATGAGGGGACTCGAGAAGAAACCAATCCCCAGCTGGAGCCACCCTTTTCATCTGATTGCAGGTTCACAGGTGAGCGTGAGGTGGGACACCAGAGCTTCTTCACCACCCTCCCTGTAAACAACCTTCTCTGGTCGAGGTGTTTTCCTTTTGCGTCACAGAGAATGACTGTGCTGTTCTTTCTCCTCTGCTCTCAGTTGCTTCTTGTTGGTGGTGTTATGactATTGTCATGGAGAAGAACATCACCTTGTCCTGCAAAAACATTTCTGCAGGAGATGGTTACACCTACCGAGTGTCACCTGATATATTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474000 True 501 lncRNA 0.46 3 3182972 3200751

Neighbor

gene id symbol gene type direction distance location
trnay-gua_7 NA coding downstream 13551 3169334 ~ 3169421 (-)
si:ch211-108d22.2 LOC108272973 coding downstream 70720 3079234 ~ 3112252 (-)
LOC113523961 LOC108272987,LOC106591917 coding downstream 103743 2914034 ~ 3079229 (-)
LOC113523971 LOC108272994 coding downstream 658793 2517791 ~ 2524179 (-)
cbx2 cbx2 coding downstream 675831 2498979 ~ 2507141 (-)
jpt1b hn1 coding upstream 6157 3206908 ~ 3222780 (-)
LOC113534415 LOC108272862,LOC108272567,LOC100526730,LOC108272468,LOC108261103,LOC108280065,LOC108272463,LOC108279536 coding upstream 49335 3250086 ~ 3293868 (-)
gga3b gga3,LOC106606567 coding upstream 95168 3295919 ~ 3309397 (-)
trnae-cuc_42 NA coding upstream 110610 3311361 ~ 3311432 (-)
evplb LOC108272806 coding upstream 181363 3382114 ~ 3403530 (-)
G399532 NA non-coding downstream 14369 3167877 ~ 3168603 (-)
G399494 NA non-coding downstream 112704 3011867 ~ 3070268 (-)
G399491 NA non-coding downstream 136460 2957236 ~ 3046512 (-)
G399492 NA non-coding downstream 147317 3027698 ~ 3035655 (-)
G399496 NA non-coding downstream 183516 2993840 ~ 2999456 (-)
G399530 NA non-coding upstream 34892 3235643 ~ 3249326 (-)
G399541 NA non-coding upstream 42806 3243557 ~ 3245044 (-)
G399543 NA non-coding upstream 72805 3273556 ~ 3274842 (-)
LOC113534314 NA non-coding upstream 159920 3360671 ~ 3363611 (-)
LOC113534841 NA non-coding upstream 160131 3360882 ~ 3360954 (-)
G399490 nup85,LOC106601803 other downstream 218815 2961713 ~ 2964157 (-)
G399028 NA other downstream 756366 2372296 ~ 2426606 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 805341 2354909 ~ 2377631 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 1301914 1730090 ~ 1881058 (-)
st13 st13,f10a1 other downstream 1591238 1565795 ~ 1591734 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 23314 3224065 ~ 3234324 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 919646 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 950148 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 1094465 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 1397049 4597800 ~ 4635057 (-)

Expression


Co-expression Network