LOC113525126 (sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874)


Basic Information

Item Value
gene id LOC113525126
gene name sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3224065 ~ 3234324 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU474032
GCGGCCGGTTTTTCAAGGCGGGGGCGCGGACGTGCGCGTCCCCGCGGAGTCTTTTGTGTGGCGGCGTAAGGGCAGCGCAAATACAATAACCATGGCAGACGAGAAACCCAAGgaggGAGTGAAAACTGAGAACAATGACCACATCAACCTGAAGGTGGCGGGACAGGACGGCTCAGTGGTGCAGTTTAAGATTAAAAGGCACACGCCGCTCAGCAAACTCATGAAGGCTTACTGCGAGAGACAGGGACTGACGATGAGGCAAATCCGATTCCGGTTCGATGGGCAGCCCATTAATGAGACAgacacacctgcacagTTGGAAATGGAGGACGAAGACACAATTGACGTTTTCCAGCAACAGACAGGAGGCTTCGTCTAAACGCAGAACCTTCACTgccttcttcctctctctctctctctctctctctctctctctctttctctctcttccctcttttCCCTCACAGTTACTCCTGACTGCTGTTGTATAGCGTGTTGATGCTCTTCCACCTTTGCAGTTCCTGCTTTTTGTATATAAGTGATTTTTTCATTCACACGTTAAAGTGGCAGTGTGAACGCCGTGAGATCAGAAgcccagaattttttttttttttttttctttggcaaGAAGTGACCACAAAAGCTCCCACAAACAGCAGCCCGTGGTCCAGACCTTTCTGCTAAACCGCCATTTGAGTAGAGCGATTTTactttaaagacattttgacaCCGAAATTAAGGCGAGACGGTTTTCGTCTCATGTCCtcaaaagacataaaaaaaaaaatcactttgtatGAAATGAACACTTGATGAAGTTATACTCTGTAATACAGGACAagtctgtaatttttattattttagctgcttttatttctgttatcttctttcagacaaattgttttttttttttttttgttattaattggCAGTAGACGTGTAAAGTGAAACAAGCCCCGGATTCAGTAGGTGaattgtgaataataataataataataagtcctGATATTTCTGTCAAGTTAAGCA
>XM_026911585.2
CCGGGGTCGTGGCCGCGCACGTCGCGGCCGGTTTTTCAAGGCGGGGGCGCGGACGTGCGCGTCCCCGCGGAGTCTTTTGTGTGGCGGCGTAAGGGCAGCGCAAATACAATAACCATGGCAGACGAGAAACCCAAGgaggGAGTGAAAACTGAGAACAATGACCACATCAACCTGAAGGTGGCGGGACAGGACGGCTCAGTGGTGCAGTTTAAGATTAAAAGGCACACGCCGCTCAGCAAACTCATGAAGGCTTACTGCGAGAGACAGGGACTGACGATGAGGCAAATCCGATTCCGGTTCGATGGGCAGCCCATTAATGAGACAgacacacctgcacagTTGGAAATGGAGGACGAAGACACAATTGACGTTTTCCAGCAACAGACAGGAGGCTTCGTCTAAACGCAGAACCTTCACTgccttcttcctctctctctctctctctctctctctctctctctttctctctcttccctcttttCCCTCACAGTTACTCCTGACTGCTGTTGTATAGCGTGTTGATGCTCTTCCACCTTTGCAGTTCCTGCTTTTTGTATATAAGTGATTTTTTCATTCACACGTTAAAGTGGCAGTGTGAACGCCGTGAGATCAGAAgcccagaattttttttttttttttttctttggcaaGAAGTGACCACAAAAGCTCCCACAAACAGCAGCCCGTGGTCCAGACCTTTCTGCTAAACCGCCATTTGAGTAGAGCGATTTTactttaaagacattttgacaCCGAAATTAAGGCGAGACGGTTTTCGTCTCATGTCCtcaaaagacataaaaaaaaaaatcactttgtatGAAATGAACACTTGATGAAGTTATACTCTGTAATACAGGACAagtctgtaatttttattattttagctgcttttatttctgttatcttctttcagacaaattgttttttttttttttttgttattaattggCAGTAGACGTGTAAAGTGAAACAAGCCCCGGATTCAGTAGGTGaattgtgaataataataataataataagtcctGATATTTCTGTCAAGTTAAGCATCTGTATTGTCTAATAAATCAtttgttaaaataaa

Function

symbol description
sumo2b Predicted to enable protein tag and ubiquitin-like protein ligase binding activity. Acts upstream of or within chordate embryonic development and definitive hemopoiesis. Predicted to be active in nucleus. Is expressed in brain; cranial neural crest cell; digestive system; eye; and pectoral fin bud. Orthologous to human SUMO2 (small ubiquitin like modifier 2).
sumo2 Enables ubiquitin protein ligase binding activity. Involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and protein sumoylation. Located in PML body.

GO:

id name namespace
GO:0016925 protein sumoylation biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12160 SUMO, SMT3; small ubiquitin-related modifier

RNA

RNA id representative length rna type GC content exon number start site end site
TU474032 False 1026 TUCP 0.43 4 3224100 3234301
XM_026911585.2 True 1084 mRNA 0.43 4 3224065 3234324

Neighbor

gene id symbol gene type direction distance location
jpt1b hn1 coding downstream 1285 3206908 ~ 3222780 (-)
LOC117595704 NA coding downstream 35978 3178517 ~ 3188087 (-)
trnay-gua_7 NA coding downstream 54644 3169334 ~ 3169421 (-)
si:ch211-108d22.2 LOC108272973 coding downstream 111813 3079234 ~ 3112252 (-)
LOC113523961 LOC108272987,LOC106591917 coding downstream 144836 2914034 ~ 3079229 (-)
LOC113534415 LOC108272862,LOC108272567,LOC100526730,LOC108272468,LOC108261103,LOC108280065,LOC108272463,LOC108279536 coding upstream 15762 3250086 ~ 3293868 (-)
gga3b gga3,LOC106606567 coding upstream 61595 3295919 ~ 3309397 (-)
trnae-cuc_42 NA coding upstream 77037 3311361 ~ 3311432 (-)
evplb LOC108272806 coding upstream 147790 3382114 ~ 3403530 (-)
atg4db LOC108272831 coding upstream 185056 3419380 ~ 3427527 (-)
G399507 NA non-coding downstream 23314 3182972 ~ 3200751 (-)
G399537 NA non-coding downstream 29157 3185836 ~ 3194908 (-)
G399532 NA non-coding downstream 55462 3167877 ~ 3168603 (-)
G399494 NA non-coding downstream 153797 3011867 ~ 3070268 (-)
G399491 NA non-coding downstream 177553 2957236 ~ 3046512 (-)
G399530 NA non-coding upstream 1319 3235643 ~ 3249326 (-)
G399541 NA non-coding upstream 9233 3243557 ~ 3245044 (-)
G399543 NA non-coding upstream 39232 3273556 ~ 3274842 (-)
LOC113534314 NA non-coding upstream 126347 3360671 ~ 3363611 (-)
LOC113534841 NA non-coding upstream 126558 3360882 ~ 3360954 (-)
LOC113525117 NA other downstream 27502 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 259908 2961713 ~ 2964157 (-)
G399028 NA other downstream 797459 2372296 ~ 2426606 (-)
mmd mmd,LOC107567562,LOC107696363,LOC107695694 other downstream 846434 2354909 ~ 2377631 (-)
G398890 LOC108272981,LOC108272980,LOC108272984,LOC108273047,LOC108272983,LOC108414567,LOC108412175,LOC108413798 other downstream 1343007 1730090 ~ 1881058 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 886073 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 916575 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 1060892 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 1363476 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 1726778 4961102 ~ 5008464 (-)

Expression


Co-expression Network