LOC113534314


Basic Information

Item Value
gene id LOC113534314
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3360671 ~ 3363611 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU474141
GCCTGTTGTTGAGCTGCAAGGAGGATGTTTGGCTTTCTAACGCTCATAAATAAGATGTTTAATGCTGGAAGTTTAAATATGGGCACTCTAAAACCGCCTTGATTGAATGGATGCGGATTGTGTGGATTGTCTTCACTACAAATGAATCCTGGAAGGAAAATCCAGCTTGAACATCAGCTCCAGCAGGTCACCGCTTACAGGCTGTGACTGGACCGGATCAACCTCGGATTAATCCCAGACTAGgGGATGGAGGATGAAGATTCAGTGACGTCCTTGATGGAAAAGGATGCTCAATTGTGAAAGGAAGAATGGTCACTGAGTCATGTGACTGCTATTATTGCTTATTTCATTAATGTATGAAGgctgtataaataaagctaTTAATCA
>TU474142
GCCTGTTGTTGAGCTGCAAGGAGGATGTTTGGCTTTCTAACGCTCATAAATAAGATGTTTAATGCTGGAAGTTTAAATATGGGCACTCTAAAACCGCCTTGATTGAATGGATGCGGATTGTGTGGATTGTCTTCACTACAAATGAATCCTGGAAGGAAAATCCAGCTTGAACATCAGCTCCAGCAGGTCACCGCTTACAGGCTGTGACTGGACCGGATCAACCTCGGATTAATCCCAGACTAGGGATGGAGGATGAAGATTCAGTGACGTCCTTGATGGAAAAGGATGCTCAATTGTGAAAGGAAGAATGGTCACTGAGTCATGTGACTGCTATTATTGCTTATTTCATTAATGTATGAAGgctgtataaataaagctaTTAATCA
>XR_004577534.1
GCTGGTCTCTTTTCCGCCTGTTGTTGAGCTGCAAGGAGGATGTTTGGCTTTCTAACGCTCATAAATAAGATGTTTAATGCTGGAAGTTTAAATATGGGCACTCTAAAACCGCCTTGATTGAATGGATGCGGATTGTGTGGATTGTCTTCACTACAAATGAATCCTGGAAGGAAAATCCAGCTTGAACATCAGCTCCAGCAGGTCACCGCTTACAGGCTGTGACTGGACCGGATCAACCTCGGATTAATCCCAGACTAGgGGATGGAGGATGAAGATTCAGTGACGTCCTTGATGGAAAAGGATGCTCAATTGTGAAAGGAAGAATGGTCACTGAGTCATGTGACTGCTATTATTGCTTATTTCATTAATGTATGAAGgctgtataaataaagctaTTAATCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474141 False 387 lncRNA 0.42 4 3360674 3363596
TU474142 False 386 lncRNA 0.42 4 3360674 3363596
XR_004577534.1 True 405 lncRNA 0.42 4 3360671 3363611

Neighbor

gene id symbol gene type direction distance location
trnae-cuc_42 NA coding downstream 49239 3311361 ~ 3311432 (-)
gga3b gga3,LOC106606567 coding downstream 51274 3295919 ~ 3309397 (-)
LOC113525116 LOC100526730,LOC108272815,LOC108280069,LOC108279574,LOC108280065 coding downstream 65381 3118335 ~ 3295290 (-)
LOC113534415 LOC108272862,LOC108272567,LOC100526730,LOC108272468,LOC108261103,LOC108280065,LOC108272463,LOC108279536 coding downstream 66803 3250086 ~ 3293868 (-)
jpt1b hn1 coding downstream 137891 3206908 ~ 3222780 (-)
evplb LOC108272806 coding upstream 18503 3382114 ~ 3403530 (-)
atg4db LOC108272831 coding upstream 55769 3419380 ~ 3427527 (-)
mast1b mast1,LOC107567212 coding upstream 70117 3433728 ~ 3464801 (-)
junbb LOC108272820 coding upstream 124662 3488273 ~ 3490167 (-)
ubn2b LOC108272810 coding upstream 221663 3585274 ~ 3600490 (-)
G399543 NA non-coding downstream 85829 3273556 ~ 3274842 (-)
G399530 NA non-coding downstream 111345 3235643 ~ 3249326 (-)
G399541 NA non-coding downstream 115627 3243557 ~ 3245044 (-)
G399507 NA non-coding downstream 159920 3182972 ~ 3200751 (-)
G399537 NA non-coding downstream 165763 3185836 ~ 3194908 (-)
G399629 NA non-coding upstream 51354 3414965 ~ 3431282 (-)
LOC117596450 NA non-coding upstream 151201 3514812 ~ 3516233 (-)
G399727 NA non-coding upstream 197537 3561148 ~ 3562361 (-)
G399738 NA non-coding upstream 221290 3584901 ~ 3585214 (-)
G399742 NA non-coding upstream 237435 3601046 ~ 3635560 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 65398 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 126347 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 164108 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 396514 2961713 ~ 2964157 (-)
G399028 NA other downstream 934065 2372296 ~ 2426606 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 756786 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 787288 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 931605 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 1234189 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 1597491 4961102 ~ 5008464 (-)

Expression


Co-expression Network