Item | Value |
---|---|
gene id | G399629 |
gene name | NA |
gene type | non-coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047623.1 |
NCBI id | CM018569.1 |
chromosome length | 15305753 |
location | 3414965 ~ 3431282 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
id | name | namespace |
---|---|---|
GO:0021532 | neural tube patterning | biological_process |
GO:0021903 | rostrocaudal neural tube patterning | biological_process |
GO:0021915 | neural tube development | biological_process |
GO:0009952 | anterior/posterior pattern specification | biological_process |
GO:0007389 | pattern specification process | biological_process |
GO:0030917 | midbrain-hindbrain boundary development | biological_process |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU474150 | True | 885 | lncRNA | 0.34 | 2 | 3414965 | 3431282 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
evplb | LOC108272806 | coding | downstream | 11435 | 3382114 ~ 3403530 (-) |
trnae-cuc_42 | NA | coding | downstream | 103533 | 3311361 ~ 3311432 (-) |
gga3b | gga3,LOC106606567 | coding | downstream | 105568 | 3295919 ~ 3309397 (-) |
LOC113534415 | LOC108272862,LOC108272567,LOC100526730,LOC108272468,LOC108261103,LOC108280065,LOC108272463,LOC108279536 | coding | downstream | 121097 | 3250086 ~ 3293868 (-) |
jpt1b | hn1 | coding | downstream | 192185 | 3206908 ~ 3222780 (-) |
mast1b | mast1,LOC107567212 | coding | upstream | 2446 | 3433728 ~ 3464801 (-) |
junbb | LOC108272820 | coding | upstream | 56991 | 3488273 ~ 3490167 (-) |
ubn2b | LOC108272810 | coding | upstream | 153992 | 3585274 ~ 3600490 (-) |
LOC113534607 | LOC108272840 | coding | upstream | 316200 | 3747482 ~ 3754120 (-) |
si:ch211-106h11.3 | LOC108272832,LOC108439110 | coding | upstream | 363577 | 3794859 ~ 3809349 (-) |
LOC113534314 | NA | non-coding | downstream | 51354 | 3360671 ~ 3363611 (-) |
LOC113534843 | NA | non-coding | downstream | 53139 | 3361748 ~ 3361826 (-) |
LOC113534841 | NA | non-coding | downstream | 54011 | 3360882 ~ 3360954 (-) |
G399543 | NA | non-coding | downstream | 140123 | 3273556 ~ 3274842 (-) |
G399530 | NA | non-coding | downstream | 165639 | 3235643 ~ 3249326 (-) |
LOC117596450 | NA | non-coding | upstream | 83530 | 3514812 ~ 3516233 (-) |
G399727 | NA | non-coding | upstream | 129866 | 3561148 ~ 3562361 (-) |
G399738 | NA | non-coding | upstream | 153619 | 3584901 ~ 3585214 (-) |
G399742 | NA | non-coding | upstream | 169764 | 3601046 ~ 3635560 (-) |
G399783 | NA | non-coding | upstream | 297657 | 3728939 ~ 3729385 (-) |
G399489 | LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 | other | downstream | 119692 | 3017290 ~ 3295273 (-) |
LOC113525126 | sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 | other | downstream | 180641 | 3224065 ~ 3234324 (-) |
LOC113525117 | NA | other | downstream | 218402 | 3147299 ~ 3196563 (-) |
G399490 | nup85,LOC106601803 | other | downstream | 450808 | 2961713 ~ 2964157 (-) |
G399028 | NA | other | downstream | 988359 | 2372296 ~ 2426606 (-) |
LOC113534693 | LOC108272825,LOC108439127,LOC108272467 | other | upstream | 689115 | 4120397 ~ 4132922 (-) |
LOC113534684 | NA | other | upstream | 719617 | 4150899 ~ 4159750 (-) |
maptb | mapt,LOC108272803,LOC108439131 | other | upstream | 863934 | 4295216 ~ 4338427 (-) |
polr3gla | LOC108272317,LOC108415116 | other | upstream | 1166518 | 4597800 ~ 4635057 (-) |
sept7a | LOC108272655,LOC108441798,LOC107698647 | other | upstream | 1529820 | 4961102 ~ 5008464 (-) |