G399629



Basic Information


Item Value
gene id G399629
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3414965 ~ 3431282 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU474150
acACTAGTTTCAGCAGATAAAgcttttctgtgtttgtatcGTGATTGTATTCACAAACATCAGAGCGCTTGAAAAATTACAGACGGCccctttaatattttacatgtaTATTTTTTGGCAGATGTTTTTATCCAACGCAAATTAGAATCCAATCCTTAACAGTTGAGGATAAACCTCTGTAAAGATTAgatattccattaaaaaaaataataaaaaatagaaaaaaaaatctctcaacAAAAGCCAGTTCCATTTGTCCGAGTCGAACTGTAGATAAAAACGACGCGATAAAAAATGATGGAAAACCGACAGTGTGGTATTTTGTTTCTCAATTTCAAACTATTCAGCGTAGCAGTAATTACATTTTCTAATCACAATCATTTTCCTGTCTTTCATCCTGGTTTAGAATATTAGTTTTGGAAAATAAACTTTACAGAATTATTTCTGCTCTGAGCTCaatgttttttaaactttccTAGAAGGTTACTGAAGGGAACTACGAGATTTCCTTCTCCGATTAAGACACACGCAATTCTTCAGATTTGTATAAACGAGCTGCCTAAACGAAACACATAAACACGactttttttaaaggttaaaaCGTGTACGCAATAACGATATCCTATAAATTCACTCACGTTATATCACATTAACCACTTTTACACGCGCTCACGTTTTATTTTAGCAGACTTAACATCCAGCAGGCGTTTTTAAGGTACTGTGtgttctgctctgctctgctgtaGTGTGTTTGATGAACTCTTGTCGTAgatgatgttgtgtgtgtgaactgttcGAGTGTCTCGGTGTCTAGATTCATGTGCGCGTACGTTGTTTTCCACTTTATTgttatggaataaaaaaaaaaaaaaaaaaaaacactgt

Function


GO:

id name namespace
GO:0021532 neural tube patterning biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0021915 neural tube development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0007389 pattern specification process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU474150 True 885 lncRNA 0.34 2 3414965 3431282
Loading

Neighbor


gene id symbol gene type direction distance location
evplb LOC108272806 coding downstream 11435 3382114 ~ 3403530 (-)
trnae-cuc_42 NA coding downstream 103533 3311361 ~ 3311432 (-)
gga3b gga3,LOC106606567 coding downstream 105568 3295919 ~ 3309397 (-)
LOC113534415 LOC108272862,LOC108272567,LOC100526730,LOC108272468,LOC108261103,LOC108280065,LOC108272463,LOC108279536 coding downstream 121097 3250086 ~ 3293868 (-)
jpt1b hn1 coding downstream 192185 3206908 ~ 3222780 (-)
mast1b mast1,LOC107567212 coding upstream 2446 3433728 ~ 3464801 (-)
junbb LOC108272820 coding upstream 56991 3488273 ~ 3490167 (-)
ubn2b LOC108272810 coding upstream 153992 3585274 ~ 3600490 (-)
LOC113534607 LOC108272840 coding upstream 316200 3747482 ~ 3754120 (-)
si:ch211-106h11.3 LOC108272832,LOC108439110 coding upstream 363577 3794859 ~ 3809349 (-)
LOC113534314 NA non-coding downstream 51354 3360671 ~ 3363611 (-)
LOC113534843 NA non-coding downstream 53139 3361748 ~ 3361826 (-)
LOC113534841 NA non-coding downstream 54011 3360882 ~ 3360954 (-)
G399543 NA non-coding downstream 140123 3273556 ~ 3274842 (-)
G399530 NA non-coding downstream 165639 3235643 ~ 3249326 (-)
LOC117596450 NA non-coding upstream 83530 3514812 ~ 3516233 (-)
G399727 NA non-coding upstream 129866 3561148 ~ 3562361 (-)
G399738 NA non-coding upstream 153619 3584901 ~ 3585214 (-)
G399742 NA non-coding upstream 169764 3601046 ~ 3635560 (-)
G399783 NA non-coding upstream 297657 3728939 ~ 3729385 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 119692 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 180641 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 218402 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 450808 2961713 ~ 2964157 (-)
G399028 NA other downstream 988359 2372296 ~ 2426606 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 689115 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 719617 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 863934 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 1166518 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 1529820 4961102 ~ 5008464 (-)

Expression


G399629 Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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G399629 Expression in each Bioproject

Bar chart with 3 bars.
G399629 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
End of interactive chart.

Co-expression Network