G399783



Basic Information


Item Value
gene id G399783
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3728939 ~ 3729385 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU474360
GCGCGAGGAATCAGCTTTAAGGGCTCCGTGCAGACGCCGCATATTTAAgtatgaggacacacacacacacacacacacacacacacacactctctctctctctcacacacacacacacactctcactctctctctctctcacacacacacacacacacacacactctctctctcacacacacacacacacacacacacacacactctctcgctGACTCTGTgcaccctcacacaccctctcagTTCACTCTGAGACCCGGAGACActgatcaaagtaaaaaaaaatataaaaaatcatgtttagTGCGCagtagaggagagagaaaatcagAGTGTATGGAGCTGAGAAAGATACAGAGAGGAAAAAGTTTATCTGGAAAcggaaaggggcggggcttaacaTGCAAGTAGGGGC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU474360 True 415 lncRNA 0.48 2 3728939 3729385

Neighbor


gene id symbol gene type direction distance location
ubn2b LOC108272810 coding downstream 128449 3585274 ~ 3600490 (-)
junbb LOC108272820 coding downstream 238772 3488273 ~ 3490167 (-)
mast1b mast1,LOC107567212 coding downstream 264138 3433728 ~ 3464801 (-)
atg4db LOC108272831 coding downstream 301412 3419380 ~ 3427527 (-)
evplb LOC108272806 coding downstream 325409 3382114 ~ 3403530 (-)
LOC113534607 LOC108272840 coding upstream 18097 3747482 ~ 3754120 (-)
si:ch211-106h11.3 LOC108272832,LOC108439110 coding upstream 65474 3794859 ~ 3809349 (-)
LOC113534792 LOC108272837 coding upstream 93361 3822746 ~ 3825504 (-)
rangap1a rangap1,LOC107745514 coding upstream 197868 3927253 ~ 3937638 (-)
LOC113534507 tob2,LOC107735623 coding upstream 263840 3993225 ~ 3999563 (-)
G399742 NA non-coding downstream 93379 3601046 ~ 3635560 (-)
G399738 NA non-coding downstream 143725 3584901 ~ 3585214 (-)
G399727 NA non-coding downstream 166578 3561148 ~ 3562361 (-)
LOC117596450 NA non-coding downstream 212706 3514812 ~ 3516233 (-)
G399629 NA non-coding downstream 297657 3414965 ~ 3431282 (-)
G399804 LOC108272816 non-coding upstream 43948 3773333 ~ 3773628 (-)
G399806 LOC108272816,LOC108439142,LOC107563749,LOC107672936,LOC107755611 non-coding upstream 45920 3775305 ~ 3775700 (-)
G399811 NA non-coding upstream 52772 3782157 ~ 3782431 (-)
G399900 NA non-coding upstream 86227 3815612 ~ 3855630 (-)
G399909 NA non-coding upstream 111218 3840603 ~ 3840914 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 433666 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 494615 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 532376 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 764782 2961713 ~ 2964157 (-)
G399028 NA other downstream 1302333 2372296 ~ 2426606 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 391012 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 421514 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 565831 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 868415 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 1231717 4961102 ~ 5008464 (-)

Expression



Co-expression Network