G399900


Basic Information

Item Value
gene id G399900
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3815612 ~ 3855630 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU474500
AAGCACTCTGATGCCTCAGAAACCCTCTCAGAGAGCGAAATGTGCGTGACAGCTCGCGCTTGTGTCTCAcatcctccatttttttttctccttgatGTGAACACTTCCTGTAAAGTTGCCTGCGCCTTTCATTTCATGATGTAGCCGCTTTTTCATTCTGCttcactgttacactgtttCTGTTCCcatgaaaagcagaaaaagggCGTAAATTAGCGCGTGCGCGCGCGCAAAGTGGAAagtgtatttctttttatgtATTTCCTTTGGCGCAAGTTGCGCGCGCGCGCGTCCCACccaagtgaaggaggtgaagtgaagtgaagtgaagtgaagcacTTGGCTCGTCCTTCCTGGTTTGCTGCTTGCACTTGCACACAAAGCGGCCACATCGACCAAATCGCACGAGCGCGTGCACTGGGAACAGGTTTAATCAAGCAGTCAGTAAAAATCAGACTTACCTGCTTGTTAGCCGCTTTTTTTCTGTCCCAGGTGGATGAAGAGAAACGCAGTCGCCGGGTGCTGCTTTATCCGggatctctctctttctctctctttctctgtcacacAGCGTCGCAAACTTCCTCCGTGCAAAGCTAGCGAGCGCctctcagtctctttctttctctttttcccctcctctctctctctctctctctctctctgtgtgtgtgtgttgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474500 True 680 lncRNA 0.50 2 3815612 3855630

Neighbor

gene id symbol gene type direction distance location
si:ch211-106h11.3 LOC108272832,LOC108439110 coding downstream 6263 3794859 ~ 3809349 (-)
LOC113534607 LOC108272840 coding downstream 61492 3747482 ~ 3754120 (-)
ubn2b LOC108272810 coding downstream 215122 3585274 ~ 3600490 (-)
junbb LOC108272820 coding downstream 325445 3488273 ~ 3490167 (-)
mast1b mast1,LOC107567212 coding downstream 350811 3433728 ~ 3464801 (-)
rangap1a rangap1,LOC107745514 coding upstream 71623 3927253 ~ 3937638 (-)
LOC113534507 tob2,LOC107735623 coding upstream 137595 3993225 ~ 3999563 (-)
LOC113534503 pmm1,LOC107691086,LOC107672914 coding upstream 187415 4043045 ~ 4059491 (-)
LOC113534511 NA coding upstream 251246 4106876 ~ 4117916 (-)
LOC113534634 LOC108272825 coding upstream 278708 4134338 ~ 4144544 (-)
G399811 NA non-coding downstream 33181 3782157 ~ 3782431 (-)
G399806 LOC108272816,LOC108439142,LOC107563749,LOC107672936,LOC107755611 non-coding downstream 39912 3775305 ~ 3775700 (-)
G399804 LOC108272816 non-coding downstream 41984 3773333 ~ 3773628 (-)
G399783 NA non-coding downstream 86227 3728939 ~ 3729385 (-)
G399742 NA non-coding downstream 180052 3601046 ~ 3635560 (-)
G399910 NA non-coding upstream 25763 3881393 ~ 3951397 (-)
G399929 NA non-coding upstream 30181 3885811 ~ 3887708 (-)
G399935 NA non-coding upstream 55010 3910640 ~ 3911347 (-)
G399913 NA non-coding upstream 60838 3916468 ~ 3918115 (-)
G399945 NA non-coding upstream 69336 3924966 ~ 4037931 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 520339 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 581288 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 619049 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 851455 2961713 ~ 2964157 (-)
G399028 NA other downstream 1389006 2372296 ~ 2426606 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 264767 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 295269 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 439586 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 742170 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 1105472 4961102 ~ 5008464 (-)

Expression


Co-expression Network