G399913


Basic Information

Item Value
gene id G399913
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3916468 ~ 3918115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU474524
aaataatttatcacagtactgagacatttgataaactgataaaaaaaaaaaaaactgtcattaCTGACGACACggcaaaattattttcattcagcGCTGTCTCACAGGTTATTAAAGTCTCCTCCAGCAATCCCGCAAACGAGAACAAGAGACACACGATTTAATGCACAGTGATCAGACTGAAATATAACATCACCTCTCTGTTCTACAACGTGAAGTGTAGATTACACTGAATGAGATACTGATCGTCCCATGATGTTGCTTTGCTCATATTTACTACTGAACATCTAAAGCAACTATAAACACatcattgttgaattctcaaaactgattggccagaagcagttgatttaattttctgtagTGAGAACTTCAACAGAGACTTGAACAGCAGACATTCCATGTAATCTGGTGAAGTTTTACATAAGAAGATATTTAAGGTTTATTCTGACTGGCTGCAGggggaatgagtgtttatagctactGTAACGTTACTATGCTATAATGCACTTATAGTTTATAGCCACTCAACGTCATGAACTCGTACAAAGCTGAAGTCTCAGACAGTTTGTTCATAAGGTGCAGTGACGCTCTCCTGGACACAGATGTGTGTTCATGCATGCATTacaaaaagtgtgtttttagtgCACAGCATCACATTCATGAATGCAGCTCTCCTGAGAACTTTTAGCCATTACTGAGATCTTACTGCTGCTCCTTTATCTAAACACTGAAGGTGcaataacagcagcagcaaagcATCTCAGTATCAAATGAACACTTTCCATCCGACTTATGAATTATTTGTCGCTATCAGGGCACTTTGATGCGTCTTCTCCCCAGTACTGCCCGAATTTCCAGGAAACACGTCCTTGTTCCAATCTCAATTCTCAGTTGTTTGTACAATAATAAATCTTCACCACAGTGCTGAGTGTAAACGGTGCACTGTAGATGTCTGGGATTTTAAAAAGATCATTTGTTTCTGAACGTAGCGTCTCTGAAGCAGAAACATTCACTCTCCATCTCCTGCTGTCTCAGAGACCCGAGCAAACTCTCTCATTCGTTCATATTTCagtctccatctttctcttctCCGTTTCACGCTCTGCTTTAATCCTCTATTCATCTTTCATCTGGGATTTTCTCCatctctgattctctctctcaggaTTTGAGGCCCATTCGAGCCATGAGCTGCTCGTACACGGTCCAGGCCATCGCCGCCATCATCGCCTGCGGAGACAGCGCGGCACGGCACCACGGAAAAACCCAGCCAAGCCGtgctcctgaaacacacacacacacacacacacacacatttaCAACCGATCCACTGAACATTAAAATGAGTTCAGCTCCATGTCATTAACCTGAAAGGGTCTGAAAGCAGATCATAAATTTATGATGACGGAAAAAGGAATGGAGGTGTGTAAGCGAGCGAATGTTTATACATTAACCATTTCCAGTCTGTGTACTAAAGTAACCCGGAGTAGTAAGAACTCGAGACAGAATGAACAGTGTTAACCTTTGTCCTGTCTTTagtgaagagaaagagacagaacagAAGACTAACCGTGGGGATTTCTCAATAGGACGCCTGAAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474524 True 1605 lncRNA 0.41 2 3916468 3918115

Neighbor

gene id symbol gene type direction distance location
LOC113534792 LOC108272837 coding downstream 90964 3822746 ~ 3825504 (-)
si:ch211-106h11.3 LOC108272832,LOC108439110 coding downstream 107119 3794859 ~ 3809349 (-)
LOC113534607 LOC108272840 coding downstream 162348 3747482 ~ 3754120 (-)
ubn2b LOC108272810 coding downstream 315978 3585274 ~ 3600490 (-)
junbb LOC108272820 coding downstream 426301 3488273 ~ 3490167 (-)
rangap1a rangap1,LOC107745514 coding upstream 9138 3927253 ~ 3937638 (-)
LOC113534507 tob2,LOC107735623 coding upstream 75110 3993225 ~ 3999563 (-)
LOC113534503 pmm1,LOC107691086,LOC107672914 coding upstream 124930 4043045 ~ 4059491 (-)
LOC113534511 NA coding upstream 188761 4106876 ~ 4117916 (-)
LOC113534634 LOC108272825 coding upstream 216223 4134338 ~ 4144544 (-)
G399935 NA non-coding downstream 5121 3910640 ~ 3911347 (-)
G399929 NA non-coding downstream 28760 3885811 ~ 3887708 (-)
G399900 NA non-coding downstream 60838 3815612 ~ 3855630 (-)
G399909 NA non-coding downstream 75554 3840603 ~ 3840914 (-)
G399811 NA non-coding downstream 134037 3782157 ~ 3782431 (-)
G399945 NA non-coding upstream 6851 3924966 ~ 4037931 (-)
G399950 NA non-coding upstream 90952 4009067 ~ 4066280 (-)
G399990 NA non-coding upstream 181982 4100097 ~ 4106327 (-)
G400085 NA non-coding upstream 272626 4190741 ~ 4276482 (-)
G400112 LOC108272813 non-coding upstream 316288 4234403 ~ 4293157 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 621195 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 682144 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 719905 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 952311 2961713 ~ 2964157 (-)
G399028 NA other downstream 1489862 2372296 ~ 2426606 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 202282 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 232784 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 377101 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 679685 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 1042987 4961102 ~ 5008464 (-)

Expression


Co-expression Network