G399935


Basic Information

Item Value
gene id G399935
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3910640 ~ 3911347 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU474550
GAAAGGTTCAGCACGAGGAAGAGCTGCAGGGGTCCAGCACGAGGAAGAGCTGCAGGGGGTCCAGCACGAGGAAGAGCTGCAGGGGGTCCAGCAGGAGGAAGAGCTGCAGGGGTCCAGCACGAGGAAGAGCTGCAGGTTCAGTAGGAGGAAGAGCTGCAGGGGTACAGCAGGAGGAAGAGCTACAGGTCCAGCAGGAGGAAGAGCTGCAGGTTCAGTAGGAGGAAGAGCTGCAGGGGTACAGCAGGAGGAAGAGCTGCAGGGGTTCAGTAGGAGGAAGAGCTGCAGGGGTTCAGTAGGAGGAAGAGCTGCAGGGGTTCAGTAGGAGGAAGAGCTGCAGGGGTCCAGCACTGCTGCTGTAGCGGAAGTGCAGGTCTAGTGAAGGCACGACGCTGTCTGTGTGCAGGATAAACGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474550 True 414 lncRNA 0.60 4 3910640 3911347

Neighbor

gene id symbol gene type direction distance location
LOC113534792 LOC108272837 coding downstream 85136 3822746 ~ 3825504 (-)
si:ch211-106h11.3 LOC108272832,LOC108439110 coding downstream 101291 3794859 ~ 3809349 (-)
LOC113534607 LOC108272840 coding downstream 156520 3747482 ~ 3754120 (-)
ubn2b LOC108272810 coding downstream 310150 3585274 ~ 3600490 (-)
junbb LOC108272820 coding downstream 420473 3488273 ~ 3490167 (-)
rangap1a rangap1,LOC107745514 coding upstream 15906 3927253 ~ 3937638 (-)
LOC113534507 tob2,LOC107735623 coding upstream 81878 3993225 ~ 3999563 (-)
LOC113534503 pmm1,LOC107691086,LOC107672914 coding upstream 131698 4043045 ~ 4059491 (-)
LOC113534511 NA coding upstream 195529 4106876 ~ 4117916 (-)
LOC113534634 LOC108272825 coding upstream 222991 4134338 ~ 4144544 (-)
G399929 NA non-coding downstream 22932 3885811 ~ 3887708 (-)
G399900 NA non-coding downstream 55010 3815612 ~ 3855630 (-)
G399909 NA non-coding downstream 69726 3840603 ~ 3840914 (-)
G399811 NA non-coding downstream 128209 3782157 ~ 3782431 (-)
G399806 LOC108272816,LOC108439142,LOC107563749,LOC107672936,LOC107755611 non-coding downstream 134940 3775305 ~ 3775700 (-)
G399913 NA non-coding upstream 5121 3916468 ~ 3918115 (-)
G399945 NA non-coding upstream 13619 3924966 ~ 4037931 (-)
G399950 NA non-coding upstream 97720 4009067 ~ 4066280 (-)
G399990 NA non-coding upstream 188750 4100097 ~ 4106327 (-)
G400085 NA non-coding upstream 279394 4190741 ~ 4276482 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 615367 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 676316 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 714077 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 946483 2961713 ~ 2964157 (-)
G399028 NA other downstream 1484034 2372296 ~ 2426606 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 209050 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 239552 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 383869 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 686453 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 1049755 4961102 ~ 5008464 (-)

Expression


Co-expression Network