G399990


Basic Information

Item Value
gene id G399990
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4100097 ~ 4106327 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU474609
ttaattttatatagtacataataaacacaaaatactcaACACAGGTCATTTGGAGCACTATGCTGTCAATCATCCTGATCACACAACAGAATCAGATACTGTACACAACAGAGCAAAGAGAGACATCAACAGTAAGAGTTTGGAAAATTTTTTTACAAGTACACTTAAAcctcaattttaaaaatctttgattttttttttttttttttttttacaagtataCATAAACCACAAAAACGAAGCACAGAGCTGACCAGAGTAATCTGCGACACGCCGTTGAACTCTGGGTTGTTTTTGCCATCTTTCATCCAGTCGTAAATCCACACATGatatttctaaaaacatttttactgaacGTCTCCTAAGCGACGTGTTTATAGATCTGAATCTTATATAACGTCTCTTTTAAACGTCCTGGTGATCCTCATGCTGACGATAGAACAGCAACCGAAGACCACAGCGCTGCAACTCgtacatgtaaaatgtttttttttctagaacaTTATAAAAACATCCACTTGCTGACTTGCAGCCATTAAAAAaaaaaaaaaaaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474609 True 556 lncRNA 0.34 2 4100097 4106327

Neighbor

gene id symbol gene type direction distance location
LOC113534503 pmm1,LOC107691086,LOC107672914 coding downstream 40606 4043045 ~ 4059491 (-)
LOC113534507 tob2,LOC107735623 coding downstream 100534 3993225 ~ 3999563 (-)
rangap1a rangap1,LOC107745514 coding downstream 162459 3927253 ~ 3937638 (-)
LOC113534792 LOC108272837 coding downstream 274593 3822746 ~ 3825504 (-)
si:ch211-106h11.3 LOC108272832,LOC108439110 coding downstream 290748 3794859 ~ 3809349 (-)
LOC113534511 NA coding upstream 549 4106876 ~ 4117916 (-)
LOC113534634 LOC108272825 coding upstream 28011 4134338 ~ 4144544 (-)
LOC117596393 LOC108272830 coding upstream 59997 4166324 ~ 4168560 (-)
LOC117596407 NA coding upstream 64143 4170470 ~ 4175154 (-)
LOC113534587 NA coding upstream 72784 4179111 ~ 4187724 (-)
G399950 NA non-coding downstream 33817 4009067 ~ 4066280 (-)
G399945 NA non-coding downstream 62166 3924966 ~ 4037931 (-)
G399910 NA non-coding downstream 148700 3881393 ~ 3951397 (-)
G399913 NA non-coding downstream 181982 3916468 ~ 3918115 (-)
G399935 NA non-coding downstream 188750 3910640 ~ 3911347 (-)
G400085 NA non-coding upstream 84414 4190741 ~ 4276482 (-)
G400112 LOC108272813 non-coding upstream 128076 4234403 ~ 4293157 (-)
G400131 NA non-coding upstream 174450 4280777 ~ 4281433 (-)
G400133 NA non-coding upstream 177722 4284049 ~ 4284393 (-)
G400428 NA non-coding upstream 427514 4533841 ~ 4534131 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 804824 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 865773 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 903534 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 1135940 2961713 ~ 2964157 (-)
G399028 NA other downstream 1673491 2372296 ~ 2426606 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other upstream 14070 4120397 ~ 4132922 (-)
LOC113534684 NA other upstream 44572 4150899 ~ 4159750 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 188889 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 491473 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 854775 4961102 ~ 5008464 (-)

Expression


Co-expression Network