LOC113534684


Basic Information

Item Value
gene id LOC113534684
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4150899 ~ 4159750 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU474649
aAGATCCTGGACATCCATCCACTGGGGTGTCGCTGTCAACTGTGCTGTCCTAAGGACCCGCTGCACCAGCATAAAGATGACGTGTGCTTCATTTGTAATAATGGAGAAAACATGGTGCGCTGTACCGAGTGTCCACGAGCTTTCCACCGTTACTGCCACTTACCAAGCCTACAGGACAAAACATTTGGgagcaATTGGATGTGTACTTTCTGTG
>XM_034301460.1
ATGAAAAGTAAGGAGAGAAGGCAGAATGGTGTGTATAAGATTTTGGAATGGCTGGAGAAGGAGCGAGAGCAGTGTATGAAGCTGTTTTGgagttgtgtgtttcaggagcACATCCTTCAGAAATATCCGTTTCTGCGCTCACTCCAAACCAGCCTTCTGGAAAGATCTTTCATGGTTAATGAAAAGCTGTCCAGGGCAGAGAAACTGACAGGAAATGAGGAAAAGAAGGCAGAGCAAAAGAAAGGTGGAATAAAGAGAAAGCACAGTGTTgatgagacagaggaagaggatgCAGGCCCTTCTTCTGTGTCCAGCTCCAGCCAGAAGAAGGCTATGTTCTATTGTAGTGTAGAGATGGAGGAATCCAGTGAAGAGAGCGAATCAGAGAATATGTTTGAGGCTGCTGTTTTACCAGTCAGCTGTGGTTCAGTCATTGGAGATTTATATAAAAGCAGATTTGCAGGTTCACGCAGTAAGAGCATCCGCACTGAGGAGCGCTGGTTCACTCCGGAGGAGTTCGTAAAGCAGGCGTTAACTCTGACAGATGGCCACTGGAAGAATGATATACGGTGTCATGGCAAAACCCTTAACCACCTGGTGAAGatgaAGATCCTGGACATCCATCCACTGGGGTGTCGCTGTCAACTGTGCTGTCCTAAGGACCCGCTGCACCAGCATAAAGATGACGTGTGCTTCATTTGTAATAATGGAGAAAACATGGTGCGCTGTACCGAGTGTCCACGAGCTTTCCACCGTTACTGCCACTTACCAAGCCTACAGGACAAAACATTTGGgagcaATTGGATGTGTACTTTCTGTGTGTTAAAGACTAACCAGAGATTGTGGAATCACATGAGCAGGGAAGGTGCTTTGAGCAGTCCTGTTTCCGGAAACCtcatgCGCTGTCAGtatttgctgttgcatttgtATAAGGCAGATACACAGCGTGTGTTTACTGATGATCCCTCGACAAAAGAGGAGAGATACAGAAATGTGATTTCTAATCCCATGTGGTTGGACAAAGTGAAGACCAAACTGAAGAATAACAAGTACAAAACAGTGAGAGAGTTTGTGCATGACATTAATCTCATCTTCAACAACTGCCAAACATTTAACAAGgacaaTACATTTGGCAGGATGGGAgccaaaatgaaaaagatcTTTCAGAAGGAGTTTGATACCATCTTTAAAATCCAGtagcctcttttttcctctttcacaaACCTGCATctcatttaaaaattcataatcAAAAGACAAATACTGatgttaattttttgttttgagatTTAGAATCTTGTTGTTAACTTATAAAGCTATAACGCTGAGAGCATCTGACTATTTAAGTGAACTTATCTTCTATAATCCTCCtggtttattattgttttaggATGCAGGTCTGTTAGTGATCCCAATATGTCCAATATTATGGAACTAATTTTTGCAGCCTAgatactaaaaaaatatattttattataatctaTATTTTAACATACAGTTTTATGACTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474649 False 214 lncRNA 0.49 3 4153038 4154893
XM_034301460.1 True 1510 mRNA 0.41 10 4150899 4159750

Neighbor

gene id symbol gene type direction distance location
LOC113534634 LOC108272825 coding downstream 6355 4134338 ~ 4144544 (-)
LOC113534511 NA coding downstream 32983 4106876 ~ 4117916 (-)
LOC113534503 pmm1,LOC107691086,LOC107672914 coding downstream 91408 4043045 ~ 4059491 (-)
LOC113534507 tob2,LOC107735623 coding downstream 151336 3993225 ~ 3999563 (-)
rangap1a rangap1,LOC107745514 coding downstream 213261 3927253 ~ 3937638 (-)
LOC117596393 LOC108272830 coding upstream 6574 4166324 ~ 4168560 (-)
LOC117596407 NA coding upstream 10720 4170470 ~ 4175154 (-)
LOC113534587 NA coding upstream 19361 4179111 ~ 4187724 (-)
myl4 myl4,LOC107694961,LOC107754315,LOC107585102,LOC107740645,LOC107662407 coding upstream 179785 4339535 ~ 4345214 (-)
LOC113543884 NA coding upstream 251949 4411699 ~ 4416837 (-)
G399990 NA non-coding downstream 44572 4100097 ~ 4106327 (-)
G399950 NA non-coding downstream 84619 4009067 ~ 4066280 (-)
G399945 NA non-coding downstream 112968 3924966 ~ 4037931 (-)
G399913 NA non-coding downstream 232784 3916468 ~ 3918115 (-)
G399935 NA non-coding downstream 239552 3910640 ~ 3911347 (-)
G400085 NA non-coding upstream 30991 4190741 ~ 4276482 (-)
G400112 LOC108272813 non-coding upstream 74653 4234403 ~ 4293157 (-)
G400131 NA non-coding upstream 121027 4280777 ~ 4281433 (-)
G400133 NA non-coding upstream 124299 4284049 ~ 4284393 (-)
G400428 NA non-coding upstream 374091 4533841 ~ 4534131 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 17977 4120397 ~ 4132922 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 855626 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 916575 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 954336 3147299 ~ 3196563 (-)
G399490 nup85,LOC106601803 other downstream 1186742 2961713 ~ 2964157 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 135466 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 438050 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 801352 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 968485 5128235 ~ 5140380 (-)
G400815 NA other upstream 1427648 5587398 ~ 5589747 (-)

Expression


Co-expression Network