G400085


Basic Information

Item Value
gene id G400085
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4190741 ~ 4276482 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU474749
ATTAATTTGGTTTATTCaaaattttcacaattttacgcaattttcaaaaatgttcgAATCAaaattatacatgtttataaatatgtgtattaaaatttttaattaaaacatccataaatgctatttaatttaaaagtttaaaccaataGGAAGGAAAAACCACAGCCTTGTTATTAACCTAATAAACGCCGCCTACAACCTGCGCTACGCCCAAATACCGCACGCTtagattgaaaagaaaaaaacaaaacaaaaaaacgccAAGAAAAAGAGGCGGCGCTTCGCCGAGGACTGAGCTCATAGCAATGTtcaaatatcacaaaaatatcaaatatcatacagagatacagaattggtacaggtttgaaaagtcagatgaaccagtttatgtaaaatataatgctgcattacatCCTAAGCGGTAATTCGCCGGTCGGAATTACGTCACTTTCGACCTCGAAATGTTCGACAGACGAAGTGAGAAAACTGACGCTccatgtgtgtattttgttaacaacaagctaggcagctaactcggatgagtgatgtatatttctttatcaaacagtgaactgtacagtcagtgttttagagttaacaaacaaatatgtccgtgtgttgattaatctaaagctaatacgtGCTGATTCGACTTCACACCGTACACGGGGAAGGAACTCGGATTGACTTCTCAGTTGCGGTGGCATTTcaaactttataaataaattgggCAATTTTTCAATAGcaatatgtaaaaaatgaaaaaattgaaatcgtcacaccatcatacacacacacaactacacagtGTTACAGCAACACACAAAATTCTGCTGTGATCAGTGTATCGTCCCAGAATGTGTGTTACGTCCCTGATTAATTCTCTTTCCAAAGAGGTCAAGAcactgttgagtgtgtgttgcctGTTGCGGGAATCAGTCACGCCCTGTTCTATACAACTGACTGTTAACGTGAAGCCATCACGTCATCCACTCTTCACATCCAGTAACGTGACACTTCACACACAGTGACGTCACACTACTGTTCACACATCAGTGAATAACATTACCGTTTAAAGGCTGTAAGAGGTTAAGCGTTTATACTTAAAgccaaacgtgtgtgtgtgtgtgtgtGTATAAAAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474749 True 1144 lncRNA 0.37 2 4190741 4276482

Neighbor

gene id symbol gene type direction distance location
LOC113534587 NA coding downstream 3017 4179111 ~ 4187724 (-)
LOC117596407 NA coding downstream 15587 4170470 ~ 4175154 (-)
LOC117596393 LOC108272830 coding downstream 22181 4166324 ~ 4168560 (-)
LOC113534634 LOC108272825 coding downstream 46197 4134338 ~ 4144544 (-)
LOC113534511 NA coding downstream 72825 4106876 ~ 4117916 (-)
myl4 myl4,LOC107694961,LOC107754315,LOC107585102,LOC107740645,LOC107662407 coding upstream 63053 4339535 ~ 4345214 (-)
LOC113543884 NA coding upstream 135217 4411699 ~ 4416837 (-)
zfpm2b LOC108272465 coding upstream 142096 4418578 ~ 4456600 (-)
gh1 NA coding upstream 212266 4488748 ~ 4491287 (-)
LOC113543882 NA coding upstream 221411 4497893 ~ 4500858 (-)
G399990 NA non-coding downstream 84414 4100097 ~ 4106327 (-)
G399950 NA non-coding downstream 124461 4009067 ~ 4066280 (-)
G399945 NA non-coding downstream 152810 3924966 ~ 4037931 (-)
G399913 NA non-coding downstream 272626 3916468 ~ 3918115 (-)
G399935 NA non-coding downstream 279394 3910640 ~ 3911347 (-)
G400131 NA non-coding upstream 4295 4280777 ~ 4281433 (-)
G400133 NA non-coding upstream 7567 4284049 ~ 4284393 (-)
G400428 NA non-coding upstream 257359 4533841 ~ 4534131 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding upstream 282006 4558488 ~ 4562020 (-)
G400432 NA non-coding upstream 285729 4562211 ~ 4563364 (-)
LOC113534684 NA other downstream 30991 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 57819 4120397 ~ 4132922 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 895468 3017290 ~ 3295273 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 956417 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 994178 3147299 ~ 3196563 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 18734 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 321318 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 684620 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 851753 5128235 ~ 5140380 (-)
G400815 NA other upstream 1310916 5587398 ~ 5589747 (-)

Expression


Co-expression Network