G400131


Basic Information

Item Value
gene id G400131
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4280777 ~ 4281433 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU474819
CCGAgagataaataaacagataaacaggtAAATAAAGAGGTAATGAGGTAAATGAAGAggtaaataaacagataaaaaggtAACAAAAAGAGGTAATGaggtaaataaacataaaaaggtgaataaacagataaagatgtGAATAAACAGGTAAAGAGGTAAACAGAGAGGTAAAGAGGTAAATAAAAGGTAAACAGAGAGGTAAAGAGGTAAACAGCGAGGTAAAAAAGGTAAACAGCGAGGTAAAGAGGTAAATAAAAGGTAAACAGAGAGGTAAAGAGGTAAACAGCGAGGTAAAAAAGGTAAACAGCGAGGTAAAGAGGTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU474819 True 327 lncRNA 0.33 3 4280777 4281433

Neighbor

gene id symbol gene type direction distance location
LOC113534587 NA coding downstream 93053 4179111 ~ 4187724 (-)
LOC117596407 NA coding downstream 105623 4170470 ~ 4175154 (-)
LOC117596393 LOC108272830 coding downstream 112217 4166324 ~ 4168560 (-)
LOC113534634 LOC108272825 coding downstream 136233 4134338 ~ 4144544 (-)
LOC113534511 NA coding downstream 162861 4106876 ~ 4117916 (-)
myl4 myl4,LOC107694961,LOC107754315,LOC107585102,LOC107740645,LOC107662407 coding upstream 58102 4339535 ~ 4345214 (-)
LOC113543884 NA coding upstream 130266 4411699 ~ 4416837 (-)
zfpm2b LOC108272465 coding upstream 137145 4418578 ~ 4456600 (-)
gh1 NA coding upstream 207315 4488748 ~ 4491287 (-)
LOC113543882 NA coding upstream 216460 4497893 ~ 4500858 (-)
G400085 NA non-coding downstream 4295 4190741 ~ 4276482 (-)
G399990 NA non-coding downstream 174450 4100097 ~ 4106327 (-)
G399950 NA non-coding downstream 214497 4009067 ~ 4066280 (-)
G399945 NA non-coding downstream 242846 3924966 ~ 4037931 (-)
G399913 NA non-coding downstream 362662 3916468 ~ 3918115 (-)
G400133 NA non-coding upstream 2616 4284049 ~ 4284393 (-)
G400428 NA non-coding upstream 252408 4533841 ~ 4534131 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding upstream 277055 4558488 ~ 4562020 (-)
G400432 NA non-coding upstream 280778 4562211 ~ 4563364 (-)
G400477 NA non-coding upstream 498178 4779611 ~ 4785657 (-)
LOC113534684 NA other downstream 121027 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 147855 4120397 ~ 4132922 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 985504 3017290 ~ 3295273 (-)
maptb mapt,LOC108272803,LOC108439131 other upstream 13783 4295216 ~ 4338427 (-)
polr3gla LOC108272317,LOC108415116 other upstream 316367 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 679669 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 846802 5128235 ~ 5140380 (-)
G400815 NA other upstream 1305965 5587398 ~ 5589747 (-)

Expression


Co-expression Network