G400428


Basic Information

Item Value
gene id G400428
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4533841 ~ 4534131 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU475162
CTCGACAAGTCTCAAGATAAATAACGTTAATTCTAGGCTAACGTTATGTAACGTAACAGTAATGCTAAGTAACGTTAATGCCTATAATTTTGGCCTGGCTCCAAAAAGGCACAAAGGGAAcgaaataagaaaataagtacaaaatacaaaaaaaaacaacaaaagtgcTGTGGAAACATCACTGTCAGTTCCTACACTCTTTTCTAGCATTACAGCGTCCTAGCACTAGCACGTCACAAGTTGCTTACATTGCTGAGGATAGTGCCTGGTCAGTTATatacaatatcacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU475162 True 291 lncRNA 0.37 1 4533841 4534131

Neighbor

gene id symbol gene type direction distance location
thbs3b LOC108272910 coding downstream 8434 4507481 ~ 4525407 (-)
LOC113543882 NA coding downstream 32983 4497893 ~ 4500858 (-)
gh1 NA coding downstream 42554 4488748 ~ 4491287 (-)
zfpm2b LOC108272465 coding downstream 77241 4418578 ~ 4456600 (-)
LOC113543884 NA coding downstream 117004 4411699 ~ 4416837 (-)
mtx1b mtx1b,mtx1,LOC108272909,LOC103026555,LOC108410892 coding upstream 865 4534996 ~ 4553366 (-)
si:dkeyp-92c9.4 NA coding upstream 133656 4667787 ~ 4691369 (-)
si:dkey-81h8.1 LOC108272626,LOC103028165,LOC107702549,LOC107672832,LOC107710627,LOC108442974 coding upstream 160335 4694466 ~ 4706433 (-)
sema4ab LOC108272624 coding upstream 175607 4709738 ~ 4747838 (-)
pex11b pex11b coding upstream 302719 4836850 ~ 4839788 (-)
G400112 LOC108272813 non-coding downstream 240684 4234403 ~ 4293157 (-)
G400133 NA non-coding downstream 249448 4284049 ~ 4284393 (-)
G400131 NA non-coding downstream 252408 4280777 ~ 4281433 (-)
G400085 NA non-coding downstream 257359 4190741 ~ 4276482 (-)
G399990 NA non-coding downstream 427514 4100097 ~ 4106327 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding upstream 24357 4558488 ~ 4562020 (-)
G400432 NA non-coding upstream 28080 4562211 ~ 4563364 (-)
G400477 NA non-coding upstream 245480 4779611 ~ 4785657 (-)
LOC113543895 NA non-coding upstream 278530 4812661 ~ 4817295 (-)
G400494 NA non-coding upstream 299623 4833754 ~ 4833983 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 195414 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 374091 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 400919 4120397 ~ 4132922 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 1238568 3017290 ~ 3295273 (-)
polr3gla LOC108272317,LOC108415116 other upstream 63669 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 426971 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 594104 5128235 ~ 5140380 (-)
G400815 NA other upstream 1053267 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1638857 6172988 ~ 6175260 (-)

Expression


Co-expression Network