G400432


Basic Information

Item Value
gene id G400432
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4562211 ~ 4563364 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU475168
TGATTATTAATTTCCGACCAGAAGACAAGGACTGGAGAGAAAGCAGAAAGGCAATGAGGAGCAAAGTGTTCAAAAACTTTTCAATTCTAAATCTTCTGCAGTTGAACTTGGCTTAGCTAAGCAAGCTAAATAAGGCTAATAAGCGTTCTTTGATATCAGCCTTTATTGAGAAACGGTTTGTGTTGTGCTCAAGTGTCACCgtttcattgttttttctcATAGAATATGTACTAATTTACATAAACGGAAACGTCAAATTAGTCTCACTATAGTGAGCAGCTAAGTggaatattagctagctaggctACATGTGTTTATTCTATATAAGGTGTGTAATGCAATAACATTATCTGTATCCTTATTTGATTAGTACTCCACATATTCGTATCAGTATCTCTTACATCTAACCCCGAATTGTGCgttagaagtttttttttattattaaaatatgaaccTTTTTAAATCCTGCTTGCTCaggttgtatttttgtttgtacccaTCAGTGAAATTTTCTAACACATCGAGTTGCTTCATTTTcccaaaatttaaacaaactagtagcttaatttaaagcacagcgaccctgaccaggcagttgcgtactaaaaatgctgtaaatgcatcacgcAGAGCcgcataaaagtaaaaacctctAACTCAAGCAACGTTTTTGTTGCGTCCTGACACACGGATCTGACCTACACCTCTCGTCTCAACCAGATACCCCGTGTCCCTGTGGACACGTTACCTGTTCGTTCCAAAGAATTTATTCCCATTGGGTTACATCGCTACTGTATACTGGTGCCTCATAACACTTCTGAGTTTTTATTAGTGATGAAATCTGACTTTGAGTCCTGTATTGAAAAGTAACAGACGCTCCAGTGAAAGCTAGAAGTCTGGTTTGCGAGTCTAGCTGAACCAAACAGGATGTTAGGTTTACATCCAATGCTGCCACTGCTTACATTCATGAGTATGCACTTGCAGCAGAATTTAGGTCCATGTGGCTAAAGCTACTTTCTTCTAGCATTTCATTAGCTTTCTACTGTTTAGAGAGCTGAGGAAGGAAGTGAtggggtaaaaataaaaaataaaatgtagcaaaatggtgtaattttttaaaatattaattatttaattgtacTAAGAATGCTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU475168 True 1154 lncRNA 0.37 1 4562211 4563364

Neighbor

gene id symbol gene type direction distance location
mtx1b mtx1b,mtx1,LOC108272909,LOC103026555,LOC108410892 coding downstream 8845 4534996 ~ 4553366 (-)
thbs3b LOC108272910 coding downstream 36804 4507481 ~ 4525407 (-)
LOC113543882 NA coding downstream 61353 4497893 ~ 4500858 (-)
gh1 NA coding downstream 70924 4488748 ~ 4491287 (-)
zfpm2b LOC108272465 coding downstream 105611 4418578 ~ 4456600 (-)
si:dkeyp-92c9.4 NA coding upstream 104423 4667787 ~ 4691369 (-)
si:dkey-81h8.1 LOC108272626,LOC103028165,LOC107702549,LOC107672832,LOC107710627,LOC108442974 coding upstream 131102 4694466 ~ 4706433 (-)
sema4ab LOC108272624 coding upstream 146374 4709738 ~ 4747838 (-)
pex11b pex11b coding upstream 273486 4836850 ~ 4839788 (-)
rit1 rit1,LOC107563922,LOC105906336,LOC107676106 coding upstream 277539 4840903 ~ 4850568 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding downstream 191 4558488 ~ 4562020 (-)
G400428 NA non-coding downstream 28080 4533841 ~ 4534131 (-)
G400112 LOC108272813 non-coding downstream 269054 4234403 ~ 4293157 (-)
G400133 NA non-coding downstream 277818 4284049 ~ 4284393 (-)
G400131 NA non-coding downstream 280778 4280777 ~ 4281433 (-)
G400477 NA non-coding upstream 216247 4779611 ~ 4785657 (-)
LOC113543895 NA non-coding upstream 249297 4812661 ~ 4817295 (-)
G400494 NA non-coding upstream 270390 4833754 ~ 4833983 (-)
G400503 NA non-coding upstream 318342 4881706 ~ 4884003 (-)
G400500 NA non-coding upstream 347986 4911350 ~ 4918883 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 223784 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 402461 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 429289 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1327887 3224065 ~ 3234324 (-)
LOC113525117 NA other downstream 1365648 3147299 ~ 3196563 (-)
polr3gla LOC108272317,LOC108415116 other upstream 34436 4597800 ~ 4635057 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 397738 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 564871 5128235 ~ 5140380 (-)
G400815 NA other upstream 1024034 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1609624 6172988 ~ 6175260 (-)

Expression


Co-expression Network