polr3gla (LOC108272317,LOC108415116)


Basic Information

Item Value
gene id polr3gla
gene name LOC108272317,LOC108415116
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4597800 ~ 4635057 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU475178
atgtgtgtgtgtgtgtgtgtgtgagtgtgtgtatgaggaagTGGTTATTAACACACCATCATGGCATCTGTAAACGCTCACTCCATTCCTGTATTGTTTCTAACACACCCTTGTTGATTTCTCAGATAGAGAGCTTTAGCAGTATAAGGGGAGGAGTGTGTAGCGTGGGAATGGATTATTCAATCAAAACACAGAACGCAGCCAAAAAAACCACGTCCATAGAGAATTAAAATTTTACATAGATGGAATGCTAATTCCTGTTAAATTGGAATAAAAAGATGTAATTAATTCTTGTTCCATCAGAGGTGAGTACAAATGACATAAAACCCAATTTGcactcattatatatatatatattaggtaTTTTATTGCTGCTGTTTTACATCCTGCTGTTTACATTTATTAGCAGCTTTGTCCGTTATTTATTTAAGGATATGCCAGAACGCAATGCATTTTGGGACATTCTTTTTTGTCATAATGTCATTGAATGTATTTGAGACAATAAGCTGTAAAAtcatagggtttttttttggtaatgttATTGAATGAGTCTGAAAGAATAAACTGTGAATCATGCTGATGAAGAGATGATGAAGTGTTACATGTAAGCTCTGTACTGTGAGGGCAGAAATAATGAAGTCATCCAGCAGGTGGAGTAATTTACTGCAGTAGCAGAGCTGCTCGGTTCTGTCCGGTTCCTTCAATTGAGTTGAAGCTCTAATCTCTAAGCTCTGTTCAACTCAATAAAGAGGATGGGATGATATCAGGGTGTGATGGAATAATGTGATATGACAATCTTAAACAATGATGTACTTTAAGTgcatttatgaattaaaatgtgttataaaatgtttattgatcTGCATTTAGCAGTTAAAACACTGCCTCAGTTT
>TU475179
ttttttttttttaatgttattgaatGAGTCTGAAAGAATAAACTGTGAATCATGCTGATGAAGAGATGATGAAGTGTTACATGTAAGCTCTGTACTGTGAGGGTAGAAATAATGAAGTCATCCAGCAGGTGGAGTAATTTACTGCAGTAGCAGAGCTGCTCGGTTCTGTCCGGTTCCTTCAATTGAGTTGAAGCTCTAATCTCTAAGCTCTGTTCAACTCAATAAAGAGGATGGGATGATATCAGGGTGTGATGGAATAATGTGATATGACAATCTTAAACAATGATGTACTTTAAGTgcatttatgaattaaaatgtgttataaaatgtttattgatcTGCATTTAGCAGTTAAAACACTGCCTCAGTTT
>XM_034301691.1
TCCTGCCGGTGCGGAAGTGGAATTCGGTGTGAGAGACTCGGCATCGCCCACGTGGTTAAGAAGAGACTTCGCTTTAATGTTAGTCGACAGAGAACACAAAACTATCGAGTTATTTCATCATATCTGGTGTgctttttatattgttttatttattttatcatagATGGAGAGTTAGCTAAAGTGTTAGCTTAGCAGGCTAATTAGCAGGTTAGCACTGGAGGGCCTAAAGGAGTTGAGCTGAGCATCGATCAgagACGTCATGTCTGGAAGAGGTCGAGGCCGGAGTCTCTTCACCTTTAACGTGGACTGTCTGGGTTTCGGCAGAGGAGAGGCTTTACCCAGCAGCGCTCAGGCACCTTCACCGCTCTACCCTCCCATGCAGTTCAGGCCGGTTCCTCTGCAGACGGGAGAGGAGGTGGAGTACATGCTCGCGCTTAAACAGGAGCTCCGAGCCTCCAGCAAGAACCTGCCCTTCCACATCCAACCCTCTGCACCTAAGAAAGACGTGGGGCGTTACTCTGATAAATACCAGACTGGAGAGGCCAAGCGTGGCGAATGGACTCCAGACTGGAGTCGACTCCCTAAAGAGCTTTGCATCAAAGTTCAGAAGTCGCGCAAAGCCAAGACCAAACCGGTAGTCAAGAGCAAAAAGAAACCTGCTGCTCCCAAAGAACTCTTACAAAAACTGGAGAACCTggaaaagaaagaggaggaaaaccagtccgaggaggaggaggacgagaagaagaagaagactggagaggaagaagaagagccTGATGATGCTGAGGGGTATGATGAAGAAGAGTTTGAAGAGgagaCGGACTACATCATGTCCTACTTTGACAACGGCGAGGAATTTGGAGGAGACAGCGATGACAATATGGACGAAGCTACCTactaaaaaacacaattttatacaatgacattgtatttatttctcatgTGCTGGAGATTTTTCATTTAGACgagggactgtgtgtgtgtgtgtgtatgtgtgtgtatgtgagtgtgtgtatgaggaagTGGTTATTAACACACCATCATGGCATCTGTAAACGCTCACTCCATTCCTGTATTGTTTCTAACACACCCTTGTTGATTTCTCAGATAGAGAGCTTTAGCAGTATAAGGGGAGGAGTGTGTAGCGTGGGAATGGATTATTCAATCAAAACACAGAACGCAGCCAAAAAAACCACGTCCATAGAGAATTAAAATTTTACATAGATGGAATGCTAATTCCTGTTAAATTGGAATAAAAAGATGTAATTAATTCTTGTTCCATCAGAGGTGAGTACAAATGACATAAAACCCAATTTGcact
>XM_034301692.1
GCGGAAGTGGAATTCGGTGTGAGAGACTCGGCATCGCCCACGTGGTTAAGAAGAGACTTCGCTTTAATGTTAGTCGACAGAGAACACAAAACTATCGAGTTATTTCATCATATCTGACGTCATGTCTGGAAGAGGTCGAGGCCGGAGTCTCTTCACCTTTAACGTGGACTGTCTGGGTTTCGGCAGAGGAGAGGCTTTACCCAGCAGCGCTCAGGCACCTTCACCGCTCTACCCTCCCATGCAGTTCAGGCCGGTTCCTCTGCAGACGGGAGAGGAGGTGGAGTACATGCTCGCGCTTAAACAGGAGCTCCGAGCCTCCAGCAAGAACCTGCCCTTCCACATCCAACCCTCTGCACCTAAGAAAGACGTGGGGCGTTACTCTGATAAATACCAGACTGGAGAGGCCAAGCGTGGCGAATGGACTCCAGACTGGAGTCGACTCCCTAAAGAGCTTTGCATCAAAGTTCAGAAGTCGCGCAAAGCCAAGACCAAACCGGTAGTCAAGAGCAAAAAGAAACCTGCTGCTCCCAAAGAACTCTTACAAAAACTGGAGAACCTggaaaagaaagaggaggaaaaccagtccgaggaggaggaggacgagaagaagaagaagactggagaggaagaagaagagccTGATGATGCTGAGGGGTATGATGAAGAAGAGTTTGAAGAGgagaCGGACTACATCATGTCCTACTTTGACAACGGCGAGGAATTTGGAGGAGACAGCGATGACAATATGGACGAAGCTACCTactaaaaaacacaattttatacaatgacattgtatttatttctcatgTGCTGGAGATTTTTCATTTAGACgagggactgtgtgtgtgtgtgtgtatgtgtgtgtatgtgagtgtgtgtatgaggaagTGGTTATTAACACACCATCATGGCATCTGTAAACGCTCACTCCATTCCTGTATTGTTTCTAACACACCCTTGTTGATTTCTCAGATAGAGAGCTTTAGCAGTATAAGGGGAGGAGTGTGTAGCGTGGGAATGGATTATTCAATCAAAACACAGAACGCAGCCAAAAAAACCACGTCCATAGAGAATTAAAATTTTACATAGATGGAATGCTAATTCCTGTTAAATTGGAATAAAAAGATGTAATTAATTCTTGTTCCATCAGAGGTGAGTACAAATGACATAAAACCCAATTTGcact

Function

NR:

description
PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU475178 False 893 lncRNA 0.35 3 4597800 4635057
TU475179 False 371 lncRNA 0.35 2 4597800 4631283
XM_034301691.1 True 1324 mRNA 0.45 8 4598422 4602800
XM_034301692.1 False 1186 mRNA 0.46 8 4598422 4602790

Neighbor

gene id symbol gene type direction distance location
mtx1b mtx1b,mtx1,LOC108272909,LOC103026555,LOC108410892 coding downstream 44434 4534996 ~ 4553366 (-)
thbs3b LOC108272910 coding downstream 72393 4507481 ~ 4525407 (-)
LOC113543882 NA coding downstream 96942 4497893 ~ 4500858 (-)
gh1 NA coding downstream 106513 4488748 ~ 4491287 (-)
zfpm2b LOC108272465 coding downstream 141200 4418578 ~ 4456600 (-)
si:dkeyp-92c9.4 NA coding upstream 32730 4667787 ~ 4691369 (-)
si:dkey-81h8.1 LOC108272626,LOC103028165,LOC107702549,LOC107672832,LOC107710627,LOC108442974 coding upstream 59409 4694466 ~ 4706433 (-)
sema4ab LOC108272624 coding upstream 74681 4709738 ~ 4747838 (-)
pex11b pex11b coding upstream 201793 4836850 ~ 4839788 (-)
rit1 rit1,LOC107563922,LOC105906336,LOC107676106 coding upstream 205846 4840903 ~ 4850568 (-)
G400432 NA non-coding downstream 34436 4562211 ~ 4563364 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding downstream 35780 4558488 ~ 4562020 (-)
G400428 NA non-coding downstream 63669 4533841 ~ 4534131 (-)
G400112 LOC108272813 non-coding downstream 304643 4234403 ~ 4293157 (-)
G400133 NA non-coding downstream 313407 4284049 ~ 4284393 (-)
G400477 NA non-coding upstream 144554 4779611 ~ 4785657 (-)
LOC113543895 NA non-coding upstream 177604 4812661 ~ 4817295 (-)
G400494 NA non-coding upstream 198697 4833754 ~ 4833983 (-)
G400503 NA non-coding upstream 246649 4881706 ~ 4884003 (-)
G400500 NA non-coding upstream 276293 4911350 ~ 4918883 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 259373 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 438050 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 464878 4120397 ~ 4132922 (-)
G399489 LOC100526730,LOC108272862,LOC108261293,LOC108272815,LOC108272567,LOC108280065,LOC108261153,LOC108279530,LOC108261103,LOC108272472,LOC108280069,LOC108257281,LOC108261104,LOC108257289,LOC108257310 other downstream 1302527 3017290 ~ 3295273 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 326045 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 493178 5128235 ~ 5140380 (-)
G400815 NA other upstream 952341 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1537931 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1736560 6371617 ~ 6374500 (-)

Expression


Co-expression Network