G400477


Basic Information

Item Value
gene id G400477
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4779611 ~ 4785657 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU475232
TCATCACAATATTGAAGACAGAAACAAGAAGATAATGATGGTTTCACTTTAATTATAACAGATGTTTCAGGATGCAATTTGAGAATATGAGAGGAGaatttcaaaatataaatacGAGAACGTCAGGACAACACGTCTGAGATTTTTAGGGCACTGATATACACTAGTGGTCAAAAGTATGGACTGGAATGAGTAAATATCTTGTATGgctttaaagacattttgataaagATGGGTAGAATGTGTTGTGAAGTCAATGCCCTAGGATCAATTTATTTCTGAagcaaaatgttttcatgtaaaAGAGAAAATTGTTTCCCCAAACAACACGTTCTTGTTTCCTGGTTATTTGGGAACTTGAAGAAAAGTCTCTTGGCTGAAGCTCCCTCATGATgcctttaaaatataaaatattttgaatttataaCACTTTTCTTGTTTGCTTCATAATTCcatatgtgttatttcatagtgttaatgtattcattattattctaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtcaaaacccTTCTATGagcaggggtgcacaaacttttgactggtagtgtatTGTAAAAACAGGAAGGTGAGAAGACTTAACAGTgccattacacaaacacacttaacACGACACGATACATTACTAGTGTTACATGTAGAAAAGCATTCAGTATTAATGTACTGATTTCAGttacaaatattttagaaaacaatagacagttttttttatttatttattttttacaaaactCCAGTTTAtgatgatttaaaatgattgtACAGTTTTACATTTGTGGTCCCTTTAGACGGAATCTACTTTTGGTAACAGTTGGATGAAATGATTTGAAATTATGTTGCACAGGATCAACAAAAATCATCAGGCAGACTTTTTCACTGGAATAACGCATGATTAGtgttgagagagaaaaagcgaCTGCTTAAATGAAGAGcaattaagagagagagagagagagagagagagagagtatgtttTGATGGctagaaaatgtgaaaatcatccctccatcttgaGCTAACTGAAGAGCGGCGCTCACAGTAGAAGGCAGGTGCATTTGGACACTTTCTCGTGGCTGAGCAGGCCGAATTGGGACGTAGCCAAGCTTTGGATCAGGGTCCAGAAGTGTTTGAAGGTTATTCCCTCTCCATCCTTCACCCCCATCTGCTTCAGCACCTCCCCGAACCCTGCGTCCGACCCTCCAGTCTGACGAGGTTGGGCAGCTGCGAGGAAAGGAGGCTCTTGAATTCATCTGCCTTGAGCGTGGAGCCTTTATCAGCCGAAGCAGAGTGGAAGTTTGTGACCAGAGTGTTGATGGCCTTCTCAAGGTCTGAAaacCTGTTCCGCCATTTCAGCCGctcctttctccttctcttcagCAATTTGGTGCTCGACCTTCCTCCGTTGCTGTCACATCTTGGCTG
>TU475233
TCATCACAATATTGAAGACAGAAACAAGAAGATAATGATGGTTTCACTTTAATTATAACAGATGTTTCAGGATGCAATTTGAGAATATGAGAGGAGaatttcaaaatataaatacGAGAACGTCAGGACAACACGTCTGAGATTTTTAGGGCACTGATATACACTAGTGGTCAAAAGTATGGACTGGAATGAGTAAATATCTTGTATGgctttaaagacattttgataaagATGGGTAGAATGTGTTGTGAAGTCAATGCCCTAGGATCAATTTATTTCTGAagcaaaatgttttcatgtaaaAGAGAAAATTGTTTCCCCAAACAACACGTTCTTGTTTCCTGGTTATTTGGGAACTTGAAGAAAAGTCTCTTGGCTGAAGCTCCCTCATGATgcctttaaaatataaaatattttgaatttataaCACTTTTCTTGTTTGCTTCATAATTCcatatgtgttatttcatagtgttaatgtattcattattattctaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtcaaaacccTTCTATGagcaggggtgcacaaacttttgactggtagtgtatTGTAAAAACAGGAAGGTGAGAAGACTTAACAGTgccattacacaaacacacttaacACGACACGATACATTACTAGTGTTACATGTAGAAAAGCATTCAGTATTAATGTACTGATTTCAGttacaaatattttagaaaacaatagacagttttttttatttatttattttttacaaaactCCAGTTTAtgatgatttaaaatgattgtACAGTTTTACATTTGTGGTCCCTTTAGACGGAATCTACTTTTGGTAACAGTTGGATGAAATGATTTGAAATTATGTTGCACAGGATCAACAAAAATCATCAGGCAGACTTTTTCACTGGAATAACGCATGATTAGtgttgagagagaaaaagcgaCTGCTTAAATGAAGAGcaattaagagagagagagagagagagagagagagagtatgtttTGATGGctagaaaatgtgaaaatcatccctccatcttgaGCTAACTGAAGAGCGGCGCTCACAGTAGAAGGCAGGTGCATTTGGACACTTTCTCGTGGCTGAGCAGGCCGAATTGGGACGTAGCCAAGCTTTGGATCAGGGTCCAGAAGTGTTTGAAGGTTATTCCCTCTCCATCCTTCACCCCCATCTGCTTCAGCACCTCCCCGAACCCTGCGTCCGACCCTCCAGTCTGACGAGGTTGGGCAGCTGCGAGGAAAGGAGGCTCTTGAATTCATCTGCCTTGAGCGTGGAGCCTTTATCAGCCGAAGCAGAGTGGAAGTTTGTGACCAGAGTGTTGATGGCCTTCTCAAGGTCTGAAaactgaatgagagagagagagagaatttagcTTCGATGCTGTCATGAAGAAAGCCACaatctcaaaaacaaacaaacaaacagtagtTGTTTAATAGAAGAGGAGGAAACTTTTCAACCGAGGAAACA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU475232 False 1446 lncRNA 0.38 3 4779611 4785657
TU475233 True 1485 lncRNA 0.37 2 4781941 4785657

Neighbor

gene id symbol gene type direction distance location
sema4ab LOC108272624 coding downstream 31773 4709738 ~ 4747838 (-)
si:dkey-81h8.1 LOC108272626,LOC103028165,LOC107702549,LOC107672832,LOC107710627,LOC108442974 coding downstream 73178 4694466 ~ 4706433 (-)
si:dkeyp-92c9.4 NA coding downstream 88242 4667787 ~ 4691369 (-)
mtx1b mtx1b,mtx1,LOC108272909,LOC103026555,LOC108410892 coding downstream 226245 4534996 ~ 4553366 (-)
thbs3b LOC108272910 coding downstream 254204 4507481 ~ 4525407 (-)
pex11b pex11b coding upstream 51193 4836850 ~ 4839788 (-)
rit1 rit1,LOC107563922,LOC105906336,LOC107676106 coding upstream 55246 4840903 ~ 4850568 (-)
syt11a LOC108272614 coding upstream 71563 4857220 ~ 4877644 (-)
si:dkey-222b8.1 si:dkey-222b8.1,LOC108273360,LOC108441801,LOC107672874,LOC107698642,LOC103033551,LOC107550085,LOC107748351,LOC105906332 coding upstream 98941 4884598 ~ 4905395 (-)
snapin snapin,LOC106569889 coding upstream 122869 4908526 ~ 4910977 (-)
G400432 NA non-coding downstream 216247 4562211 ~ 4563364 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding downstream 217591 4558488 ~ 4562020 (-)
G400428 NA non-coding downstream 245480 4533841 ~ 4534131 (-)
G400112 LOC108272813 non-coding downstream 486454 4234403 ~ 4293157 (-)
LOC113543895 NA non-coding upstream 27004 4812661 ~ 4817295 (-)
G400494 NA non-coding upstream 48097 4833754 ~ 4833983 (-)
G400503 NA non-coding upstream 96049 4881706 ~ 4884003 (-)
G400500 NA non-coding upstream 125693 4911350 ~ 4918883 (-)
G400517 LOC108273316 non-coding upstream 226530 5012187 ~ 5012795 (-)
polr3gla LOC108272317,LOC108415116 other downstream 144554 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 441184 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 619861 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 646689 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1545287 3224065 ~ 3234324 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 175445 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 342578 5128235 ~ 5140380 (-)
G400815 NA other upstream 801741 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1387331 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1585960 6371617 ~ 6374500 (-)

Expression


Co-expression Network