G400503


Basic Information

Item Value
gene id G400503
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4881706 ~ 4884003 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU475268
TTTGATGTTAAGTGTGAGATGGCTTTCTAAATAGCTAGCATTCTAACTACCTGGCCATGCcactagctagcttgctaactaagCTAGCTGAATGAGGTAATGAGGTAAGCTGACTGAGAACCAACTCTTTAGGAAGggttaaccctaaccctaaccctaaccctgttttttattttattttattttatttttttaaatacctagCTTTAGCTAACTCACTAAAATCACTGACTATACCTTTACCTGATTGTTTTTGCTCattgttaataattttgttaCTGTTTTCTTAACTATAACagacatatttgtgtttgtagttcACCAAAGTTGTTTTTATGATTAAGTTAACCAGCTATCATAATGATGAACACATAGCCAGAATACATTAAAGTTGGTTAAAGTATAAAGTAACTTTGTTAATTATGTTGCTCTCTGTAAACCTAACCCTCTtcaataagtttttttttagtttttagtaaAGCTACAAGGTTAACAGggaattattaatgaataattgaataCTACGTACAATGAGATGCTTCTGATGTTTGTTCATGGTTAAAATGCGTTAGCTAGCTTATAAACTACCCTTTGTTATTTTAGAGCTTGCTTGCCGGTAACTTGGATAACCCTGTtcaaaattatttctttaattttgagtttttattaaaactacAAAGTTACAATGGACAATACTCCATATTACGTACGATGAGGCTGCTTCTGAGGTTCGTTAAAATATCTTAGCTAGCTGGTAGAGTGGTTTGTTAGTTAGGTTTCTCTGTGTTAACTTGGTTAACGCTACtcaaaaagttattttttcagGGTTTTTATTAAAGCTAGTTTATAAAGTAACTTTCTGAGTTAGTTTGGTCTCTGATAACCTGAGTCTTTCTTACATTTACAAAGTTAGCTAGGAATTATTAGTGAATAATTGCATATTACGCATGAGGAGGCACTTTTTATGTTTGTTCACAGTTAaaatgcattagctagctagctcaaaAACTTGCTccgttcatttttttttgttcaagctacaaagttTGCAAGGGATTATTAGTGAGTAAACAAACAATACGTACGATGAGACGCAGCTGATGCTTGTTTGCGGTTAAAATGCCACTCAGTGAGAACTGCTACACGTTAACGTTTTTCATTTAGTCTATAACATTGTTTAACATTATAAACCATGATGAGATGTTATATAAAGTCATTTATCTATTCACGTTATAATGATGTAATATCGGCACATGTCTAATATCAGTTGTGTGACCTTTCAAAAGCATTTTACGTCATTTTTGGGGTTTTGTAtggttttatttacagtgatgATGAAACCCTCACTATGTCTGGAATGTATCTACTTCACTTTAGCAGTTACTGAGAGCTTTCAGGTTTCATGATGGATGCAAGAGTCCGGGGTGTGTATGATGCAGGCTCAGGTCACACAGAGAACTCCCAGCCTCTGTGAACTTAAATACAGCTACACTATTTattctgcctttttttaaaaaaacaaaacaaaaatcattcagCGTTATTTCATACATGCCTTTAGATGTCTGCTAGTGGGATTCACACCTGAACTTCAACCTGAACTTTGACTTTAGATCAGATCACAGAGAATTGGACCCCGATCCTGGCACCACAAGTCCATTCGTCTCTGCTTGAACTTGTACATAACATTTAATCCACGAGCTGTTGGTGAATTAACATAGTGATTTTAAGCATCTGTTATGAAATAGAACTAGAGTTTAGTTTTGCTACTGCATAGCTTGCTAATTACTGTAGCGCAGAAATAAGCGTTGGGTCCAAACCCGTTAAGCGGCGACCATTTTGGACAACGTCTTCGTTTTGCCTTAGAACAAGGTGAAGTGAAGGTCAGCATCTGCTGCAGCTGTCGCCATCATGTGAAAGTAGGTTTATTTCTAACACCTTGTGTCACCTCGCCCACTTATCCTACGATATATTTGGTGTTCTGTTGTAGCTTATCTGAGAATAGAAAGTTTCCTTTAGTCATTGTTCATCAGGACAAACTAAAAAAGCGCTTGTCCCCGTTTGCCTCTGATGCTTAACGAAGTTATAAAATACATGATGAAATCATgtgtcagtaacatgacaatcacTGAACTGGAAAAATTGAATCTAAAGCATTCCACGTGTTTCTTACAAAGTATTTATCAGTATGTTACCTGGTGTGAAAACTGGACTATTTTATTGATATTGTTATTTCAGTTAATGTTGtaattagaattattttattgttgaaGGACGTTCGGCTCCTGTATGTTGACT

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU475268 True 2298 lncRNA 0.35 1 4881706 4884003

Neighbor

gene id symbol gene type direction distance location
syt11a LOC108272614 coding downstream 4062 4857220 ~ 4877644 (-)
rit1 rit1,LOC107563922,LOC105906336,LOC107676106 coding downstream 31138 4840903 ~ 4850568 (-)
pex11b pex11b coding downstream 41918 4836850 ~ 4839788 (-)
sema4ab LOC108272624 coding downstream 133868 4709738 ~ 4747838 (-)
si:dkey-81h8.1 LOC108272626,LOC103028165,LOC107702549,LOC107672832,LOC107710627,LOC108442974 coding downstream 175273 4694466 ~ 4706433 (-)
si:dkey-222b8.1 si:dkey-222b8.1,LOC108273360,LOC108441801,LOC107672874,LOC107698642,LOC103033551,LOC107550085,LOC107748351,LOC105906332 coding upstream 595 4884598 ~ 4905395 (-)
snapin snapin,LOC106569889 coding upstream 24523 4908526 ~ 4910977 (-)
eepd1 eepd1 coding upstream 44475 4928478 ~ 4954246 (-)
eya3 eya3 coding upstream 156283 5040286 ~ 5052042 (-)
si:ch211-195b13.1 si:ch211-195b13.1,LOC108273319,LOC103036792,LOC108411161,LOC105892152,LOC104955017 coding upstream 169762 5053765 ~ 5059583 (-)
G400494 NA non-coding downstream 47723 4833754 ~ 4833983 (-)
LOC113543895 NA non-coding downstream 64411 4812661 ~ 4817295 (-)
G400477 NA non-coding downstream 96049 4779611 ~ 4785657 (-)
G400432 NA non-coding downstream 318342 4562211 ~ 4563364 (-)
G400431 txnip,LOC107702541,LOC107731569,LOC108273074,LOC105012721,LOC105901470 non-coding downstream 319686 4558488 ~ 4562020 (-)
G400500 NA non-coding upstream 27347 4911350 ~ 4918883 (-)
G400517 LOC108273316 non-coding upstream 128184 5012187 ~ 5012795 (-)
G400501 LOC108272940 non-coding upstream 146856 5030859 ~ 5035922 (-)
LOC113543905 NA non-coding upstream 356096 5240099 ~ 5242052 (-)
G400622 NA non-coding upstream 394900 5278903 ~ 5279314 (-)
polr3gla LOC108272317,LOC108415116 other downstream 246649 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 543279 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 721956 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 748784 4120397 ~ 4132922 (-)
LOC113525126 sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 1647382 3224065 ~ 3234324 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other upstream 77099 4961102 ~ 5008464 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 244232 5128235 ~ 5140380 (-)
G400815 NA other upstream 703395 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1288985 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1487614 6371617 ~ 6374500 (-)

Expression


Co-expression Network