G400517 (LOC108273316)


Basic Information

Item Value
gene id G400517
gene name LOC108273316
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5012187 ~ 5012795 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU475282
GCCTGACCCAGGTGCGCTGCGAGCGCGAGCGTGAGCGCGAGCGTGATTACCTGAAGAAGACGCCGAGCTGACACACGTGCAGGAAACACGTGAGCCTCAGGCGCCTGTCACTGCCGAAGAGGATAATatgcttgtgtgttttctggAAGGTCTTGAGCTCCAGGTCATATTGAAGCCAGAACCAGCTGAACATCTGGACTATGACGGATGACGTGAGCATGAACCCGATCAGCAAGCCGAACCAGAAGAAATCCCCATGGCGGAAAAACTCCTGCGCGAGCCACAGGATACAACACTAACACAAGCCTGAGTGCCTCAAGACGAGCTCGGAGACGCCTAAGAAGAACCAAACTGCTTAATTCCGCTAGCAGCAACATTACTCACCACCTCAATAACGCTTAACTATAACCGTTTACGTGCTAAACCACTGCGCGCAAACTAGGAAATGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU475282 True 451 lncRNA 0.53 2 5012187 5012795

Neighbor

gene id symbol gene type direction distance location
eepd1 eepd1 coding downstream 57941 4928478 ~ 4954246 (-)
snapin snapin,LOC106569889 coding downstream 101210 4908526 ~ 4910977 (-)
si:dkey-222b8.1 si:dkey-222b8.1,LOC108273360,LOC108441801,LOC107672874,LOC107698642,LOC103033551,LOC107550085,LOC107748351,LOC105906332 coding downstream 106792 4884598 ~ 4905395 (-)
syt11a LOC108272614 coding downstream 134543 4857220 ~ 4877644 (-)
rit1 rit1,LOC107563922,LOC105906336,LOC107676106 coding downstream 161619 4840903 ~ 4850568 (-)
eya3 eya3 coding upstream 27491 5040286 ~ 5052042 (-)
si:ch211-195b13.1 si:ch211-195b13.1,LOC108273319,LOC103036792,LOC108411161,LOC105892152,LOC104955017 coding upstream 40970 5053765 ~ 5059583 (-)
LOC117596451 LOC108261350,LOC108261581 coding upstream 107475 5120270 ~ 5127437 (-)
LOC117596409 NA coding upstream 138293 5151088 ~ 5152608 (-)
si:dkeyp-92c9.2 LOC108272361,LOC107571465,LOC107598237,LOC108413164,LOC107731579,LOC107702702,LOC107738595 coding upstream 196358 5209153 ~ 5213318 (-)
G400500 NA non-coding downstream 93304 4911350 ~ 4918883 (-)
G400503 NA non-coding downstream 128184 4881706 ~ 4884003 (-)
G400494 NA non-coding downstream 178204 4833754 ~ 4833983 (-)
LOC113543895 NA non-coding downstream 194892 4812661 ~ 4817295 (-)
G400477 NA non-coding downstream 226530 4779611 ~ 4785657 (-)
G400501 LOC108272940 non-coding upstream 18064 5030859 ~ 5035922 (-)
LOC113543905 NA non-coding upstream 227304 5240099 ~ 5242052 (-)
G400622 NA non-coding upstream 266108 5278903 ~ 5279314 (-)
G400676 NA non-coding upstream 358277 5371072 ~ 5380937 (-)
G400826 NA non-coding upstream 570760 5583555 ~ 5587381 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 3723 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 377130 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 673760 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 852437 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 879265 4120397 ~ 4132922 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other upstream 115440 5128235 ~ 5140380 (-)
G400815 NA other upstream 574603 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1160193 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1358822 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 2241638 7254433 ~ 7276782 (-)

Expression


Co-expression Network