LOC113543870 (LOC108272368,LOC108261349,LOC108261350)


Basic Information

Item Value
gene id LOC113543870
gene name LOC108272368,LOC108261349,LOC108261350
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5128235 ~ 5140380 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU475347
GATAAAGAAGAGAAACGCTTCAGGCTTCTTGTTTGGATTACACTAGGCTGCATATTCATGGCCACTGTACTTGGGATTGTAATCAGATGCATCTCTAAAAGTAAAGatgctgggatttgaactttcCTCTCATGTGAAGACCACTGAATGACAGAAGTTTCTCACTTTCAGTCATTCAGAGCATTCTTGTTTGACGTCCTACTTCTACCTCAGATACCTCAGACTCAAGCAGAGCCACACTGTTGCCTGTGTACTTTCTATGTACTCTGTACCTGTGTACAGTGTACTTTCTCACAGAATCAGTTGTTTAATCAGTTTCGGTCATAGGTGCCTCATGTTTACATGTTtgatttttcaccttttttgaCCTCAGAATACCTCACAGGACagagtatacagttatagacaGTGTTGCATATCATATTTCAAAATTGATAAAAGCTGCCAAACATGTAACTCACAATAACATCAGTTCTGAAGTTTGTATTACAGATTACGCACAACATAAATTGAATCGTGAATCGATactgcatttcatttcttttttgtcaCATTAATAACCATTTCAGTAAAGAATTTCTGATTATAAACAAGATCTGTGGTATTATatgtcatatttaattaatgatCCAATCTCTTTAGCTACATCCTCATTCTGTGATTCTCATTGTATGGATGATAGTTTAGGGACATTAAGAATGTGTTATTgttaattgtgttaatgtaatCTGTATTCCACTTGCTATCAATGTGTTTCTATTCTAGGTCTTCAACAAACTGAATAAAGCCCTacctcattcacacacttttgCTTCCCCCAGATAAATGTT
>XM_034301714.1
AACAAAAACGCCTCACtttcactttcctttttttcagtcAGCTGGAAGCCAGTTTTATCGAcaaaaatacagtgaaatatatgttgaaatatgaaagaaaggaaaaccctttacattttagtctttttcttaCATCCTCTCCAGCTGTTTGGTGATGATGTCCATTCCATGAGTGGCTTTTTCATCGGTTCTCAAGGCCTCAGCCTGCCCAGTTACATAGAAAGAATTACTGTGAACGACATTACCGTCTTTTACCATGACAGCGGGAAAAACTCCATAGCGCCGTGTCCCAAATGGCTCAACACCACCGCCGGCCAGCAGCACTGGGAAGACATCAGAGTCATATCACACCACAACAGACAGACCATGACTACAGCTCTCGAATCAGCCATACAGCAGTTCAATCTCACAGGCTCACCTGCGGACATTAACGTATACCAAGGCTACAGTCGCTGTGACCTCTATCCAAATGGCACCATCAAGGCATTTTTAACTCATGCGTTCAATGGGAAGGACTTCTTAAGTTTAGATATTGACAGTAAGACGTACATCGCTTCTGTTCCTCAAGCCCTCAAATATAAAAGGCAGAGGGAGCGAAATCCAGAGTTGATTGGGATCACTGCATCTTTCTACCAAAAGACCTGTTTTGATCGCTTGAAGATGTTCTTACAGCATGCTCCTGAAGTCAACACGAAGAAGGCTCCAGAGGTCAGGCTTTTTGAGCGGCAGAGATCTGGTTCCACTCTCCTCACCTGTCATGTGACTGGGTTTTACCCCAGAGCGGTGCAGGTGAAGTGGATTGGAGCAGATTTACAGCTGGTGGATGATGAGATGAATGATGTGCTGCCTAATGGTGATGGCACGTATCAGACCAGAAGGAGTGTGATCAGACCTGAGGAGGCCACAGGAGATGAGCACTACAGCTGCGTAGTGCATCACAGCAGCCTAGAGAGAAATATTACAATTCCCTGGGATAAAGAAGAGAAACGCTTCAGGCTTCTTGTTTGGATTACACTAGGCTGCATATTCATGGCCACTGTACTTGGGATTGTAATCAGATGCATCTCTAAAAGTAAAGGCACCATTTCAGATATTAATGTATACCAAGGCTACAGTCGCTGTGACCTCTATCCAAACGGCACAGTCAAGGCATTTTTAACTCATGCATTCAATGGGAAGGACTTCTTAAGTTTAGATATTGACAGTAAGAGGTACATTGCTTCTGTTCCTCAAGTCTTCAAATATAAAATTAGTAGGGAGAGGAATATAATCTTGCTTGAAACCATGGTGTCTTTCTACAAAAAGACCTGTTTTGACCGCCTTAGGATGTTCTTAGAGCATGCTCCTGGTGTCAGAATGAAGAAAGCTCCAGAGGTCAGGCTTTTTGAGCAGCAGAGATCTGGTTCCACTCTCCTCACCTGTCATGTGACTGGGTTTTACCCCAGAGCGGTGCAGGTGAAGTGGATTGGGGCAGATTTACAGCTGGTGGATGATGAGATGAATGATGTGGTGCCTAATGGTGATGGCACGTATCAGACCAGAAGGAGTGTGATCAGACCTGAGGAGAAAACAGGAGATCAGCACTACAGCTGTGTAGTGCATCACAGCAGCGTAGAGGGAAATATTACAATCCCCTGGGATAAAGAAGAGAAACGCTTCAGGCTTCTTGTTTGGATTACACTAGGCTGCATATTCATGGCCACTGTACTTGGGATTGTAATCAGATGCATCTCTAAAAGTAAAGatgctgggatttgaactttcCTCTCATGTGAAGACCACTGAATGACAGAAGTTTCTCACTTTCAGTCATTCAGAGCATTCTTGTTTGACGTCCTACTTCTACCTCAGATACCTCAGACTCAAGCAGAGCCACACTGTTGCCTGTGTACTTTCTATGTACTCTGTACCTGTGTACAGTGTACTTTCTCACAGAATCAGTTGTTTAATCAGTTTCGGTCATAGGTGCCTCATGTTTACATGTTtgatttttcaccttttttgaCCTCAGAATACCTCACAGGACagagtatacagttatagacaGTGTTGCATATCATATTTCAAAATTGATAAAAGCTGCCAAACATGTAACTCACAATAACATCAGTTCTGAAGTTTGTATTACAGATTACGCACAACATAAATTGAATCGTGAATCGATactgcatttcatttcttttttgtcaCATTAATAACCATTTCAGTAAAGAATTTCTGATTATAAACAAGATCTGTGGTATTATatgtcatatttaattaatgatCCAATCTCTTTAGCTACATCCTCATTCTGTGATTCTCATTGTATGGATGATAGTTTAGGGACATTAAGAATGTGTTATTgttaattgtgttaatgtaatCTGTATTCCACTTGCTATCAATGTGTTTCTATTCTAGGTCTTCAACAAACTGAATAAAGCCCTacctcatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU475347 False 830 lncRNA 0.36 2 5128235 5136641
XM_034301714.1 True 2437 mRNA 0.42 9 5128266 5140380

Neighbor

gene id symbol gene type direction distance location
LOC117596451 LOC108261350,LOC108261581 coding downstream 798 5120270 ~ 5127437 (-)
si:ch211-195b13.1 si:ch211-195b13.1,LOC108273319,LOC103036792,LOC108411161,LOC105892152,LOC104955017 coding downstream 68652 5053765 ~ 5059583 (-)
eya3 eya3 coding downstream 76193 5040286 ~ 5052042 (-)
eepd1 eepd1 coding downstream 173989 4928478 ~ 4954246 (-)
snapin snapin,LOC106569889 coding downstream 217258 4908526 ~ 4910977 (-)
LOC117596409 NA coding upstream 10708 5151088 ~ 5152608 (-)
si:dkeyp-92c9.2 LOC108272361,LOC107571465,LOC107598237,LOC108413164,LOC107731579,LOC107702702,LOC107738595 coding upstream 68773 5209153 ~ 5213318 (-)
LOC113543887 LOC108262220 coding upstream 74620 5215000 ~ 5221257 (-)
LOC113543693 LOC108273363,LOC108262220 coding upstream 88887 5229267 ~ 5232051 (-)
LOC113543750 NA coding upstream 110736 5251116 ~ 5257472 (-)
G400501 LOC108272940 non-coding downstream 92313 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 115440 5012187 ~ 5012795 (-)
G400500 NA non-coding downstream 209352 4911350 ~ 4918883 (-)
G400503 NA non-coding downstream 244232 4881706 ~ 4884003 (-)
G400494 NA non-coding downstream 294252 4833754 ~ 4833983 (-)
LOC113543905 NA non-coding upstream 99719 5240099 ~ 5242052 (-)
G400622 NA non-coding upstream 138523 5278903 ~ 5279314 (-)
G400676 NA non-coding upstream 230692 5371072 ~ 5380937 (-)
G400826 NA non-coding upstream 443175 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 670964 5811344 ~ 5812012 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 119771 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 493178 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 789808 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 968485 4150899 ~ 4159750 (-)
LOC113534693 LOC108272825,LOC108439127,LOC108272467 other downstream 995313 4120397 ~ 4132922 (-)
G400815 NA other upstream 447018 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 1032608 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 1231237 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 2114053 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2729023 7869403 ~ 7917693 (-)

Expression


Co-expression Network