G400676


Basic Information

Item Value
gene id G400676
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5371072 ~ 5380937 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU475475
AGTTTGTCTATTTCTGTGCTGTGACAGTGAAGAACCCAAGTGAGCTGGCAGcatgatgaacacacacagtatggatagagagagagggagagagagagagaccaatgaagatggatggagctACAAGTTCTTCCCAGCTGTAACACCATGTACgctagagagagaaagagagatggaccAAGCGACCAAGTATGTGAGAGAtgtggagaaaaataaag

Function

NR:

description
protein transport protein Sec31A isoform X2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU475475 True 218 lncRNA 0.45 2 5371072 5380937

Neighbor

gene id symbol gene type direction distance location
ptp4a3a ptp4a3,LOC108272580,LOC107702466,LOC107571462,LOC107738588,LOC107598212,LOC105902033,LOC107731571,LOC103031245 coding downstream 53228 5289830 ~ 5317844 (-)
LOC113543899 NA coding downstream 85464 5281297 ~ 5285608 (-)
LOC113543852 LOC108262220 coding downstream 94754 5268318 ~ 5276318 (-)
LOC117596412 LOC108262220 coding downstream 107799 5258555 ~ 5263273 (-)
LOC113543750 NA coding downstream 113600 5251116 ~ 5257472 (-)
glcci1a glcci1,LOC108414387,LOC107672859 coding upstream 10585 5391522 ~ 5427603 (-)
umad1 umad1 coding upstream 48024 5428961 ~ 5442861 (-)
asns asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863,LOC108410560 coding upstream 159439 5540376 ~ 5549658 (-)
bloc1s4 LOC108272578 coding upstream 169441 5550378 ~ 5559011 (-)
pard6gb LOC108272576 coding upstream 179043 5559980 ~ 5598363 (-)
G400622 NA non-coding downstream 91758 5278903 ~ 5279314 (-)
LOC113543905 NA non-coding downstream 129020 5240099 ~ 5242052 (-)
G400501 LOC108272940 non-coding downstream 335150 5030859 ~ 5035922 (-)
G400517 LOC108273316 non-coding downstream 358277 5012187 ~ 5012795 (-)
G400500 NA non-coding downstream 452189 4911350 ~ 4918883 (-)
G400826 NA non-coding upstream 202618 5583555 ~ 5587381 (-)
G400913 NA non-coding upstream 430407 5811344 ~ 5812012 (-)
G401106 NA non-coding upstream 526210 5907147 ~ 5971174 (-)
G401196 NA non-coding upstream 640617 6021554 ~ 6021765 (-)
G401230 NA non-coding upstream 716042 6096979 ~ 6187263 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 230692 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 362608 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 736015 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 1032645 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1211322 4150899 ~ 4159750 (-)
G400815 NA other upstream 206461 5587398 ~ 5589747 (-)
G401205 nelfe other upstream 792051 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 990680 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1873496 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2488466 7869403 ~ 7917693 (-)

Expression


Co-expression Network