G400815


Basic Information

Item Value
gene id G400815
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5587398 ~ 5589747 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU475643
gaggcatggcctctatgGCTGCCTCAGTGAGGAAAGTGTGACCTCTGTGAATTGCAGCCcaagtaaaggaggcgtggcctctgtggctGTTAGTgtctgtgaaggaggcgtggcctctatggCTGTTAATCTctgtgaaggaggcgtggcctctgtgcatgCTAGTCcaagtgaagggggtgtggcctctgtgcatgtcagtccaagtgaaggaggtgtggcctctgtgcatgccagtccaagtgaaggaggcgtgccCTTTGTGCGTGTCagtccaagtgaaggaggcgtggcctctctgcaGGTCAGTCCACGTGAAGGGGACGTGCCCTCTGTGCATTTCAGTCTAAGTAAAGGAGGCATAGCATATGTGCATGGCAGTTCACCTAAAGGAGACGTGGCTTTGCGCATGTTAGATTAAGTAAAAAAGGCACGGCTCAGCTACCATTTTTCATTCTGCTACTTTTCAAATCAAACTGTTTGTACAGCATGATGTTGAATGGTACCAAAACAGCTCTAAATATTAACATTGTTACCATCAGATTATTGATTGCATATCGAGACGTGTATAGTATTGCAAGGAAAAAATAGATACCTTTATCAGTTTCTATCAGATTCATACCACAACATTCTGTCTCCGGATTTGTTCCAGTCCTGTCTTTACTCGTACTGTGTTTTTCCACCAGTGAGCACTTCATGCACATTGAGTTGAAAATCCGCTCAGCTTCATCTGTCTAACCCtgactgtcactgtcactgtacAGATAAAATGCTGAGTAAACACAGTCATGCCATTTTTGGGATTTTGAGCAGTatttttatgggtttttttttttgacccacACACAGACTCTTTGCTGTTATTCTGTATTTTTGCCTTGTCACATTTTCCCTCCAGAGTGCCAGCTGTTGGGCTTATACAGCATtccctggagtgtgtgtgtgtgtgtgtgtgtttgaaaaagCATACTGGACAGTGGTTAAGGCCTGGAGGTGACTTCCTGTAGGAAAGGCTGGTGGTGTGACTGGATTTCCTGTGGAGAAGCTCTGCTGTTCTAACAAAAGTGAACTCTGTGACTGCAGATCTCAGTGTTATCACATGTCTCGATTCATGTTTTTACAGAAGTGCGAACCTCAGATTTGGACAAATATGGCCTGAAGTACAGCGTCTCCTTTGTGgaaaagtatgtgtgtgtggatgacgTTTATTATTCGGTAGAGCTTTATCTGTTTGATCTTGTGtcctgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgcaagCAGAAGTTGCCGCATTGGAGCATTGGGTTGCTGCCATGGCAGGCATTACATTAGGACAAAAGAACCCCATGAAAACccagcagagaaagagagatgtcGAGCggctcctgtctgtctctctgtgtctccgtAAACAGCACACACTTTCATGTCGTGAATCCTAGCTGGATGTTTGCCAGTCTTTACACACTAattttttgcataaatgtaaattaagacAGTAACACATATTGAAATCCATCTGAATGAAGGCATCCAGTGCTTTCATACTGTTCattagttaagtgcattaattaatttgtgGCTCTATTTCAGGGTGGTATGAGAAATGTCtgggtgtggcctaatattTTAATGAGCTTGCATGATTGACAGCCCTCAGTCGAGCAGGAATTGAGCTTGTTCGACTCTATAAGTACGGACCAACTGAATTATAGAATTATCTCAGTAGGCTGTGCTCCCTAGGTGCCTAAATTATCAGGCATTAATCTAATCATGGATTTGGGGATTTAAATTTGATCACAGTTTATAGTATCATCacaatagtttattttaaaagcctATTCTCATTGGGGATGATGCCCTATTCTCACTGGGGGCATTTTACCTGAAAGCTAGGAAGAGTTTCATTCAGGAATCTTAAATTTGCCCCAGATAAAAACACCCCAGAGTGCTGCCTACCTATGGAGCCTCTTCACAAACAGAGACTAGGTCCTATATATAGTGCACAAATGAATATCTTACTTTATTTTCCACATACGTCCACGTGTAGGCTTTAACGCGACATTTCCCAGCAGTGAATACCAGCACGTCTTGTCTCCCGCTTTTGCATTACGTAAGCTACGTTTTCTCATGACAGCACAAGCTGTGTGGTCGATAGGCTCGGTATTGTCATGCTAATGCGGGCCGTTTCTCATAGCCGAGGTCGCCATTCAAGTCCGGTGGCGTCCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU475643 True 2243 TUCP 0.44 2 5587398 5589747

Neighbor

gene id symbol gene type direction distance location
bloc1s4 LOC108272578 coding downstream 28387 5550378 ~ 5559011 (-)
asns asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863,LOC108410560 coding downstream 37740 5540376 ~ 5549658 (-)
umad1 umad1 coding downstream 144537 5428961 ~ 5442861 (-)
glcci1a glcci1,LOC108414387,LOC107672859 coding downstream 159795 5391522 ~ 5427603 (-)
rims3 rims3,LOC107672861,LOC107702460,LOC107598211,LOC107731575,LOC107571463 coding downstream 205972 5319003 ~ 5381426 (-)
dtnbp1b dtnbp1b,LOC108272579,LOC107754801,LOC107731565,LOC108435503,LOC107568291 coding upstream 224157 5813904 ~ 5846278 (-)
csnk2b csnk2b,LOC102207154,LOC100710962,LOC101175345,LOC102778826,LOC106573472 coding upstream 485829 6075576 ~ 6082184 (-)
prrc2a prrc2a,LOC103472915,LOC104953786 coding upstream 495162 6084909 ~ 6105333 (-)
neu1 LOC108272741,LOC103030882,LOC108411940,LOC108411932 coding upstream 519526 6109273 ~ 6114435 (-)
LOC113543800 LOC108272740,LOC108411932 coding upstream 528344 6118091 ~ 6124793 (-)
G400826 NA non-coding downstream 17 5583555 ~ 5587381 (-)
G400676 NA non-coding downstream 206461 5371072 ~ 5380937 (-)
G400622 NA non-coding downstream 308084 5278903 ~ 5279314 (-)
LOC113543905 NA non-coding downstream 345346 5240099 ~ 5242052 (-)
G400501 LOC108272940 non-coding downstream 551476 5030859 ~ 5035922 (-)
G400913 NA non-coding upstream 221597 5811344 ~ 5812012 (-)
G401106 NA non-coding upstream 317400 5907147 ~ 5971174 (-)
G401196 NA non-coding upstream 431807 6021554 ~ 6021765 (-)
G401230 NA non-coding upstream 507232 6096979 ~ 6187263 (-)
G401243 NA non-coding upstream 598226 6187973 ~ 6188409 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 447018 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 578934 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 952341 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 1248971 4295216 ~ 4338427 (-)
LOC113534684 NA other downstream 1427648 4150899 ~ 4159750 (-)
G401205 nelfe other upstream 583241 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 781870 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1664686 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2279656 7869403 ~ 7917693 (-)
G402673 NA other upstream 3554123 9143870 ~ 9161470 (-)

Expression


Co-expression Network