G400913


Basic Information

Item Value
gene id G400913
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5811344 ~ 5812012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU475747
GGAAAGGCTGAGACGCAGTGCGAATAAATTAACTTTGCCAGACGTTGAGCAAATCTTTCATACAacctttcagaaaaaaacaaacagcaaaaagtgaataaaatacaTCGTAAGGCCATAAAAACTCGACAACCACGTTTTTATTCCTGTTGGAAAAACCTGACATTAAATAGTCCTAAAACAGTTCAGTCTTCTGGAAAGGACAACAACCATCAAACTGGATTATAGGGTTTTTTTCCTTGACAGTCCCCACTGGCAAGCTCAGTGCAACATGAGTAGCTACTACATCGTTGAATTTTCAGTAACGAAAATGTAAAAACCTTGTTTTTGTTtaggtattttttttctcccttttctttaaaaaagtaaagctaaaaaacaaaacgaaGGAACCTGGGATGAAGGGGGTAGGGGCATCGCTACTCCATATCTTATTTTTCAGCGATATAAGCAGCACTTCAGATTTTCTCCACGGTGCCAGAGGAACCCTGTACGCGTCACACACACTCCGGTCGgatgaagaaaaggaaaggtaAGGCTGTTTCTTCATCGCGTGTTTTTCATCTCGTTTCCTCTGTCTGGCACCTCGAAGCAGAGGCTCAAGTATTTAAACAGACATTTACAGGATTATGTACAAAAAAAGTCAATGGGATCCTTTGAGAAATCACT

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU475747 True 669 lncRNA 0.39 1 5811344 5812012

Neighbor

gene id symbol gene type direction distance location
pard6gb LOC108272576 coding downstream 212981 5559980 ~ 5598363 (-)
bloc1s4 LOC108272578 coding downstream 252333 5550378 ~ 5559011 (-)
asns asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863,LOC108410560 coding downstream 261686 5540376 ~ 5549658 (-)
umad1 umad1 coding downstream 368483 5428961 ~ 5442861 (-)
glcci1a glcci1,LOC108414387,LOC107672859 coding downstream 383741 5391522 ~ 5427603 (-)
dtnbp1b dtnbp1b,LOC108272579,LOC107754801,LOC107731565,LOC108435503,LOC107568291 coding upstream 1892 5813904 ~ 5846278 (-)
csnk2b csnk2b,LOC102207154,LOC100710962,LOC101175345,LOC102778826,LOC106573472 coding upstream 263564 6075576 ~ 6082184 (-)
prrc2a prrc2a,LOC103472915,LOC104953786 coding upstream 272897 6084909 ~ 6105333 (-)
neu1 LOC108272741,LOC103030882,LOC108411940,LOC108411932 coding upstream 297261 6109273 ~ 6114435 (-)
LOC113543800 LOC108272740,LOC108411932 coding upstream 306079 6118091 ~ 6124793 (-)
G400826 NA non-coding downstream 223963 5583555 ~ 5587381 (-)
G400676 NA non-coding downstream 430407 5371072 ~ 5380937 (-)
G400622 NA non-coding downstream 532030 5278903 ~ 5279314 (-)
LOC113543905 NA non-coding downstream 569292 5240099 ~ 5242052 (-)
G400501 LOC108272940 non-coding downstream 775422 5030859 ~ 5035922 (-)
G401106 NA non-coding upstream 95135 5907147 ~ 5971174 (-)
G401196 NA non-coding upstream 209542 6021554 ~ 6021765 (-)
G401230 NA non-coding upstream 284967 6096979 ~ 6187263 (-)
G401243 NA non-coding upstream 375961 6187973 ~ 6188409 (-)
G401259 NA non-coding upstream 435444 6247456 ~ 6250036 (-)
G400815 NA other downstream 221597 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 670964 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 802880 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 1176287 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 1472917 4295216 ~ 4338427 (-)
G401205 nelfe other upstream 360976 6172988 ~ 6175260 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 559605 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1442421 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 2057391 7869403 ~ 7917693 (-)
G402673 NA other upstream 3331858 9143870 ~ 9161470 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G134684 jarid2 non-coding NC_053124.1 CM020921.1 18798605 ~ 18804191 (+)