G401205 (nelfe)


Basic Information

Item Value
gene id G401205
gene name nelfe
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6172988 ~ 6175260 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU476079
gcatgaaaaaaaaacaacaggggAAGAAAGCAGAAAACCAATAGcagttctgcattttaaaaaaaaaaagtgtgtgtgtgtgtgtgaaatgctcAGATGAAATCTTCACTGTAGACGACTTGATTCCGCTTGTCCCTGTACGAGCCTTTGGCGCTGTTCTGGACagCCAGAGAACCCCAGACTGATTTCCCCGTAGCTGCATCCAGCATGGGCTGCTTTCTAGCGATGCTGACTTTGATGGTGATGTCACCCACTGTGGTGTTATTCAGCTCTACTACAGCCTGATCTGCCGACTCCATTTTCTCAAAAGTGACAAACGCACAGTTGCGTGGTGAGTCCATGGACAGGTCGATGATGTTCCCATGCTGAGAGAAAGCTGCACGCAGGCTCTCTTCCACCATGCCTGCACCGTAAACGTACACGGTGTTTCCTTTCCGCATACCTCGCCGCTCCGGGTACGAGTCCGTACGTCTGAAGGGTCcatctctgtctcgctctctgtctcgttcacggtctctctctctttccctgtcccgctctctgtctctgtctctgtccctgtctcggCTCctgtctctgttcctctctcgtTCACGCTCTCTGTCTCGGCCACGATCTCGATCTCGATCTCTGTCCCTTTCTCGATCGCGCTCTCTTTCCAGATCCCTGTCCCGCTCGCGCTCGAAATCCCGGCTAGATGCTCCTCCACCTTCATCATCGTCACGCGAGCGG

Function

symbol description
nelfe Predicted to enable RNA binding activity. Acts upstream of or within positive regulation of hematopoietic stem cell differentiation. Predicted to be located in nucleus. Predicted to be part of NELF complex. Orthologous to human NELFE (negative elongation factor complex member E).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476079 True 732 TUCP 0.53 5 6172988 6175260

Neighbor

gene id symbol gene type direction distance location
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding downstream 1982 6150852 ~ 6171006 (-)
prrt1 prrt1,LOC108272790,LOC107694357,LOC107584308,LOC107595589,LOC107677474 coding downstream 23799 6138533 ~ 6149189 (-)
LOC113543800 LOC108272740,LOC108411932 coding downstream 48195 6118091 ~ 6124793 (-)
neu1 LOC108272741,LOC103030882,LOC108411940,LOC108411932 coding downstream 58553 6109273 ~ 6114435 (-)
prrc2a prrc2a,LOC103472915,LOC104953786 coding downstream 67655 6084909 ~ 6105333 (-)
LOC113543872 zbtb12,zbtb12.2,LOC107694350,LOC107584307,LOC107595591,LOC107711327 coding upstream 594 6175854 ~ 6183941 (-)
sacm1la sacm1l,sacm1la,LOC108273174,LOC107677458,LOC107711326,LOC107694349,LOC107584306,LOC107754789,LOC105904713 coding upstream 13832 6189092 ~ 6208987 (-)
gabbr1b gabbr1,LOC107584305,LOC107677456 coding upstream 52593 6227853 ~ 6337451 (-)
sh3bp5lb sh3bp5l,LOC108435520 coding upstream 174625 6349885 ~ 6357426 (-)
gtf2h4 gtf2h4,LOC107694324,LOC107584301,LOC107595596 coding upstream 185365 6360625 ~ 6370712 (-)
G401196 NA non-coding downstream 151223 6021554 ~ 6021765 (-)
G401106 NA non-coding downstream 201814 5907147 ~ 5971174 (-)
G400913 NA non-coding downstream 360976 5811344 ~ 5812012 (-)
G400826 NA non-coding downstream 585607 5583555 ~ 5587381 (-)
G400676 NA non-coding downstream 792051 5371072 ~ 5380937 (-)
G401243 NA non-coding upstream 12713 6187973 ~ 6188409 (-)
G401259 NA non-coding upstream 72196 6247456 ~ 6250036 (-)
G401388 NA non-coding upstream 184494 6359754 ~ 6359977 (-)
G401403 NA non-coding upstream 230046 6405306 ~ 6405878 (-)
LOC113543850 NA non-coding upstream 260271 6435531 ~ 6437074 (-)
G400815 NA other downstream 583241 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 1032608 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 1164524 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 1537931 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 1834561 4295216 ~ 4338427 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 196357 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1079173 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 1694143 7869403 ~ 7917693 (-)
G402673 NA other upstream 2968610 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 3052135 9227395 ~ 9284493 (-)

Expression


Co-expression Network