G401230


Basic Information

Item Value
gene id G401230
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6096979 ~ 6187263 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU476110
aaaaaattatttttcagttttcagTTATCACTCGAACATACACCAATGAAAATGGCTGAAAAGCCGATCACAGgcagtgcagcaggtagcattgcagccttgcagctccagggtcccaggttcgatcctgagctcgggttactgtctacatggagtttctgtgtgttttttctgtgtgggtttcttccaagttcttcagtttcttctcacctcccaaaaacatgcaggtaggtagattggctaagataaattgccctaggtgtgcatgcgtgcgtgtggttcagtgtgatggactggtgttcccTCCAGGGTTTATTCTCGCCTCTCGTCTTTATTCTcgagtgttcccaggataggctccacaTCTCCCacaaccatgaccaggataagcGGTTACTGAGTGTGAGATGAGCCAGTCGACGTGCGAATCCGGAAGGGTTGACAGTTACATAGGTGTTTTTGCACTCTCCTGTTATTAACACATACCAAGGGAAGCCCCACCCCCTTCTTTTCATGTAACATTAGTAATCTCTCGTCTGCTCTCGTCTGCTCACGTCTGCTCACGATTTTACGGCAGTGGGATCTGGGAATGAGAAACAAGCTAGCACAGAGGTGCATCACACcactaataaaatatgaaacaacTGAAAAATACATATCGAATGAAATATGTAGATTAGTAGTGAACATTTTTGATTAATGGATTGAGGAAGAACAAACACTGGTTACTGCTACACTAGTAGCGTACTGAAGCACTCTGCTGCtggccaataaaaaaaaataacactgataGATCAGACATATGATACACACACTTGTCCAGGTTGCCTCTGCTTGGTCTGGTGAACTCGATCATTTTAGTGCCTGTTTTACAAAGCGTCGAACCTGCAGTGCTAACATAGTCAAGATTTTAAATCTCCACCAAAAATTTTAAGTTACTGGTGTGTACTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476110 True 954 lncRNA 0.44 2 6096979 6187263

Neighbor

gene id symbol gene type direction distance location
csnk2b csnk2b,LOC102207154,LOC100710962,LOC101175345,LOC102778826,LOC106573472 coding downstream 14795 6075576 ~ 6082184 (-)
dtnbp1b dtnbp1b,LOC108272579,LOC107754801,LOC107731565,LOC108435503,LOC107568291 coding downstream 250701 5813904 ~ 5846278 (-)
pard6gb LOC108272576 coding downstream 498616 5559980 ~ 5598363 (-)
bloc1s4 LOC108272578 coding downstream 537968 5550378 ~ 5559011 (-)
asns asns,LOC107754811,LOC107731557,LOC107702657,LOC107672863,LOC108410560 coding downstream 547321 5540376 ~ 5549658 (-)
sacm1la sacm1l,sacm1la,LOC108273174,LOC107677458,LOC107711326,LOC107694349,LOC107584306,LOC107754789,LOC105904713 coding upstream 1829 6189092 ~ 6208987 (-)
gabbr1b gabbr1,LOC107584305,LOC107677456 coding upstream 40590 6227853 ~ 6337451 (-)
sh3bp5lb sh3bp5l,LOC108435520 coding upstream 162622 6349885 ~ 6357426 (-)
gtf2h4 gtf2h4,LOC107694324,LOC107584301,LOC107595596 coding upstream 173362 6360625 ~ 6370712 (-)
mgat1b mgat1b,LOC108272752,LOC108435525 coding upstream 205706 6392969 ~ 6405009 (-)
G401196 NA non-coding downstream 75214 6021554 ~ 6021765 (-)
G401106 NA non-coding downstream 125805 5907147 ~ 5971174 (-)
G400913 NA non-coding downstream 284967 5811344 ~ 5812012 (-)
G400826 NA non-coding downstream 509598 5583555 ~ 5587381 (-)
G400676 NA non-coding downstream 716042 5371072 ~ 5380937 (-)
G401243 NA non-coding upstream 710 6187973 ~ 6188409 (-)
G401259 NA non-coding upstream 60193 6247456 ~ 6250036 (-)
G401388 NA non-coding upstream 172491 6359754 ~ 6359977 (-)
G401403 NA non-coding upstream 218043 6405306 ~ 6405878 (-)
LOC113543850 NA non-coding upstream 248268 6435531 ~ 6437074 (-)
G400815 NA other downstream 507232 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 956599 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 1088515 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 1461922 4597800 ~ 4635057 (-)
maptb mapt,LOC108272803,LOC108439131 other downstream 1758552 4295216 ~ 4338427 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 184354 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1067170 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 1682140 7869403 ~ 7917693 (-)
G402673 NA other upstream 2956607 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 3040132 9227395 ~ 9284493 (-)

Expression


Co-expression Network