G401259


Basic Information

Item Value
gene id G401259
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6247456 ~ 6250036 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU476159
aaataaagagaggaCACTGGTTTCAGTAACAATTAAACACTGACAGATAGCAGCCAGCTGGTGGACCATAAACATCAGGTGGACAATAAAACTGCCAGATGTCTGAGTTTTTTCACGTCTCATATCCATCAGCCATCCTTGACAGATTTAACTCTGTTAAAACACACAGTAATGTGGCTAACTTAGTTGAATACCTACCTTCTAAGCCACATGACTGGCAGTGATATATCAGTAGATCAGGGTATCAGTAGATCAGTGTATCGGTAGATCAGGGTATCAGTAGATCAGTGTATCGGTAGATCAGGGTATCAGTAGATCAGTGTATCGGTAGATCAGCATATCGGtagatcagCGTATCAGtagatcagtgtatcagtagatcagtgtatcagtagatcagtgtatcggtagatcagtgtatcagtaGATCAGGGTATCAGTAGATCAGTGTATCGGtagatcagtgtatcagtagatcagtgtatcggtagatcagtgtatcagtaGATCAGGGTATCAGTAGATCAGTATATCGGtagatcagtgtatcagtaGATCAGTGTATCGGTAGATCAGTGTATCGGTAGATCAGGGTATCGGTAGATCAGGGTATCGGTAGATCAGTGTATCGGTAGATCAGCGTATCGGTAGATCAGCGTATCGGTAGATCAGTGTATCGGTGTagcaatataataataatagcaaaagTGACACATTTTCATCACATGATGTTCCCAGGCATTACAGTTAAAACATTGTTTGATTACACTGTAAGGTATTGATTGCTCTGTCATTTCTTTATTGTGTCATGGGTAATTACTGTAGATGCTTAAGGCCTCGCCAGCTCCTGAAGTCCGAGCCAATGAGTGAGCTGCTTGGATGGCTCTACCTAGAtaccacaaagaaaaaaatgaactggATAgacttttaacctttttttcccaaacaaatcttaaaaaacaaaattaatgtaGTACTACTATTCTTccatgatgatgagatgatgatgacgcTATCACAAAATGTTCACATTGGAAATCCAGATGAAATTGGCTTATTCTGCTCTCACTTCTATTGTGATTATGACGGTGGTTACACAGTTGTGTAAGTGATTACTTGGATGTGTGCAGCCTACAgggatacatttttttattcagttttggtTCCTGGAAATGATTTACATCGAGAGGGAGGAACAGGGTGTTTCAGATAGAAAGTCTTTGATCAGCTCTTGAAGCTGTAGGAGGTAAACCAGGTGATGTAGGTGTTTAAAGTACATACAAGTTCTTTTTTTCGTAGGAAAACTGAAGGCTGAAATGTTGCTACATGCGTAGCTGCAcgtctttttattttcattttcggTAGACATTAAAATAGCATAACAAACCTCAGCATGCTCCATTAGACTCAGAAATCATCCTCAACGACAAAGAATGACTGACGAAATGAATTTTGTTTTCTAGTTATACTTTTCTTTTACActttcatttgtgtatttttgttccTTCTTTTCTAAAACTGTGGCTACAGATGGTGTCATTTTCGCCTTTCGTCTTTCCGCTGTACTGTGTATATTGAGCAAGTGTTGTACATCATCTTGATACTTGGCATGATTTGTGATTacagatgaaatgaaatttcCACATGGTCAGCACTTTGACTGCTGATCTGCCGTGCAAACTTGTTTGAATGCTTATGTTTTGACGGGCACAGGAGAAAGGAAACAAGTTTTTACCCCTTTCTAATTTCACTTACCATTAAAATTctgtgtaaagtgttagatgTGACACTTCGTTGTAGGCCTAATTTTATCCGTTTTCAGTCAAAATTGTCAGCCAAATTTCCCCGAAGTAgtcattttaaccatttttggctgaaaatttAGGAACATCATTAAATATACTTTAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476159 True 1910 lncRNA 0.38 3 6247456 6250036

Neighbor

gene id symbol gene type direction distance location
sacm1la sacm1l,sacm1la,LOC108273174,LOC107677458,LOC107711326,LOC107694349,LOC107584306,LOC107754789,LOC105904713 coding downstream 38469 6189092 ~ 6208987 (-)
LOC113543872 zbtb12,zbtb12.2,LOC107694350,LOC107584307,LOC107595591,LOC107711327 coding downstream 63515 6175854 ~ 6183941 (-)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding downstream 76450 6150852 ~ 6171006 (-)
prrt1 prrt1,LOC108272790,LOC107694357,LOC107584308,LOC107595589,LOC107677474 coding downstream 98267 6138533 ~ 6149189 (-)
LOC113543800 LOC108272740,LOC108411932 coding downstream 122663 6118091 ~ 6124793 (-)
sh3bp5lb sh3bp5l,LOC108435520 coding upstream 99849 6349885 ~ 6357426 (-)
gtf2h4 gtf2h4,LOC107694324,LOC107584301,LOC107595596 coding upstream 110589 6360625 ~ 6370712 (-)
mgat1b mgat1b,LOC108272752,LOC108435525 coding upstream 142933 6392969 ~ 6405009 (-)
vars2 vars2 coding upstream 156070 6406106 ~ 6422826 (-)
c29h6orf47 c12h6orf47,LOC102784237 coding upstream 179062 6429098 ~ 6433839 (-)
G401243 NA non-coding downstream 59047 6187973 ~ 6188409 (-)
G401230 NA non-coding downstream 60193 6096979 ~ 6187263 (-)
G401196 NA non-coding downstream 225691 6021554 ~ 6021765 (-)
G401106 NA non-coding downstream 276282 5907147 ~ 5971174 (-)
G400913 NA non-coding downstream 435444 5811344 ~ 5812012 (-)
G401388 NA non-coding upstream 109718 6359754 ~ 6359977 (-)
G401403 NA non-coding upstream 155270 6405306 ~ 6405878 (-)
LOC113543850 NA non-coding upstream 185495 6435531 ~ 6437074 (-)
LOC113543912 NA non-coding upstream 185951 6435987 ~ 6436048 (-)
G401482 nsun2 non-coding upstream 316001 6566037 ~ 6567293 (-)
G401205 nelfe other downstream 72196 6172988 ~ 6175260 (-)
G400815 NA other downstream 657709 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 1107076 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 1238992 4961102 ~ 5008464 (-)
polr3gla LOC108272317,LOC108415116 other downstream 1612399 4597800 ~ 4635057 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other upstream 121581 6371617 ~ 6374500 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 1004397 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 1619367 7869403 ~ 7917693 (-)
G402673 NA other upstream 2893834 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 2977359 9227395 ~ 9284493 (-)

Expression


Co-expression Network