LOC113543850


Basic Information

Item Value
gene id LOC113543850
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6435531 ~ 6437074 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU476306
gcGCTCAGTGTGTTGAAACAGGGTTGCAGACATGGGCCTCAGCTGCAGACGTGTTGGAAATGGTGTTACAGAATGGTCTGAAGATTTCACctagctgctttttttttcttctttgtGGTTTAATGTTAAACGTCCACTAATCAAGtctgttcctgttatcatgtgAAAGGAGCTGCGTTCCTTGACTGAGGTTGGTGTGTAGAACGTGATGATGATGGAGCTTTTGTACTTTGAGTGCAAAAGATCGATGCAgatTGTGTTGCCGCACCAGTGCAGAGAGAGATGTGCTGTACCTTCAGTATGATTATGTTcatgatgctttttaaaatgtaatgctaAGTTGGCATTGATGTAGCAGCTGATACAAATAAAGCTCTGAAGTGTG
>XR_003404449.2
ACCCCAATAAAGGCTCGCGCTagtttctcctcctcctctctctctggcGCTCAGTGTGTTGAAACAGGGTTGCAGACATGGGCCTCAGCTGCAGACGTGTTGGAAATGGTGTTACAGAATGGTCTGAAGATTTCACctagctgctttttttttcttctttgtGGTTTAATGTTAAACGTCCACTAATCAAGtctgttcctgttatcatgtgAAAGGAGCTGCGTTCCTTGACTGAGGTTGGTGTGTAGAACGTGATGATGATGGAGCTTTTGTACTTTGAGTGCAAAAGATCGATGCAgatTGTGTTGCCGCACCAGTGCAGAGAGAGATGTGCTGTACCTTCAGTATGATTATGTTcatgatgctttttaaaatgtaatgctaAGTTGGCATTGATGTAGCAGCTGATACAAATAAAGCTCTGAAGTGTGCATCAAGGC

Function

GO:

id name namespace
GO:0016741 transferase activity, transferring one-carbon groups molecular_function
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU476306 False 385 lncRNA 0.42 6 6435540 6437028
XR_003404449.2 True 440 lncRNA 0.44 6 6435531 6437074

Neighbor

gene id symbol gene type direction distance location
c29h6orf47 c12h6orf47,LOC102784237 coding downstream 1692 6429098 ~ 6433839 (-)
vars2 vars2 coding downstream 12705 6406106 ~ 6422826 (-)
mgat1b mgat1b,LOC108272752,LOC108435525 coding downstream 30522 6392969 ~ 6405009 (-)
gtf2h4 gtf2h4,LOC107694324,LOC107584301,LOC107595596 coding downstream 64819 6360625 ~ 6370712 (-)
sh3bp5lb sh3bp5l,LOC108435520 coding downstream 78105 6349885 ~ 6357426 (-)
si:ch211-152p11.4 LOC108272795 coding upstream 16446 6453520 ~ 6461157 (-)
adcy2b adcy2b,LOC108272792,LOC108435531,LOC107694336,LOC107691497 coding upstream 33128 6470202 ~ 6529172 (-)
tent4a papd7,LOC108273366,LOC107691498 coding upstream 92106 6529180 ~ 6554991 (-)
srd5a1 srd5a1 coding upstream 118879 6555953 ~ 6563632 (-)
ube2ql1 ube2ql1 coding upstream 161212 6598286 ~ 6610939 (-)
G401403 NA non-coding downstream 29653 6405306 ~ 6405878 (-)
G401388 NA non-coding downstream 75554 6359754 ~ 6359977 (-)
G401259 NA non-coding downstream 185495 6247456 ~ 6250036 (-)
G401243 NA non-coding downstream 247122 6187973 ~ 6188409 (-)
G401230 NA non-coding downstream 248268 6096979 ~ 6187263 (-)
G401482 nsun2 non-coding upstream 128963 6566037 ~ 6567293 (-)
LOC117596453 NA non-coding upstream 141954 6579028 ~ 6581192 (-)
G401486 NA non-coding upstream 148779 6585853 ~ 6586574 (-)
G401491 NA non-coding upstream 157634 6594708 ~ 6594940 (-)
G401526 NA non-coding upstream 304983 6742057 ~ 6742274 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 61031 6371617 ~ 6374500 (-)
G401205 nelfe other downstream 260271 6172988 ~ 6175260 (-)
G400815 NA other downstream 845784 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 1295151 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 1427067 4961102 ~ 5008464 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 817359 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 1432329 7869403 ~ 7917693 (-)
G402673 NA other upstream 2706796 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 2790321 9227395 ~ 9284493 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other upstream 2949921 9386995 ~ 9416253 (-)

Expression


Co-expression Network