G401403


Basic Information

Item Value
gene id G401403
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6405306 ~ 6405878 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU476320
tatatatatctatatataaaatttatgcacacacacacacacagtagagtgcaaaagtcttagtgTTTTAATGACcttaaatgtttctaaaaaaaaacattaaaaaaatactgtaaagagcagtaaacagtaataaacgaaacaaagtcaatatttggtgtaactgagcatcttgcagaagcagccacagttcttctggagacttttgCAAAAGTCTTACTAAAACAAATAGGGcacctaagacttctgcacagtactgtgtatcaGCAACAACACTAGCTAATAAATCAGGCCTGTAAAGTAATTTTAGCCATGTGACAGCTGATAACAACATTATTCATCATGCGTGCAACAATATCCagcaaaagtgtgtgtttttatttatacatttaaatttttagaGTCCAGAGTGAATATAACTCAGCATGCATCATTGCTGATGAAATTACAGTCACCATCTACAAGTTTGTTTTCTAATTGTgtattaaaagcagtaaaacTAGTAAAGCAGTTCATCTGTACTGAAATGTAACCATGCACCTttctcttgtttattttttttttcaaatccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476320 True 573 lncRNA 0.32 1 6405306 6405878

Neighbor

gene id symbol gene type direction distance location
mgat1b mgat1b,LOC108272752,LOC108435525 coding downstream 297 6392969 ~ 6405009 (-)
gtf2h4 gtf2h4,LOC107694324,LOC107584301,LOC107595596 coding downstream 34594 6360625 ~ 6370712 (-)
sh3bp5lb sh3bp5l,LOC108435520 coding downstream 47880 6349885 ~ 6357426 (-)
gabbr1b gabbr1,LOC107584305,LOC107677456 coding downstream 67855 6227853 ~ 6337451 (-)
sacm1la sacm1l,sacm1la,LOC108273174,LOC107677458,LOC107711326,LOC107694349,LOC107584306,LOC107754789,LOC105904713 coding downstream 196319 6189092 ~ 6208987 (-)
vars2 vars2 coding upstream 228 6406106 ~ 6422826 (-)
c29h6orf47 c12h6orf47,LOC102784237 coding upstream 23220 6429098 ~ 6433839 (-)
si:ch211-152p11.4 LOC108272795 coding upstream 47642 6453520 ~ 6461157 (-)
adcy2b adcy2b,LOC108272792,LOC108435531,LOC107694336,LOC107691497 coding upstream 64324 6470202 ~ 6529172 (-)
tent4a papd7,LOC108273366,LOC107691498 coding upstream 123302 6529180 ~ 6554991 (-)
G401388 NA non-coding downstream 45329 6359754 ~ 6359977 (-)
G401259 NA non-coding downstream 155270 6247456 ~ 6250036 (-)
G401243 NA non-coding downstream 216897 6187973 ~ 6188409 (-)
G401230 NA non-coding downstream 218043 6096979 ~ 6187263 (-)
G401196 NA non-coding downstream 383541 6021554 ~ 6021765 (-)
LOC113543850 NA non-coding upstream 29653 6435531 ~ 6437074 (-)
LOC113543912 NA non-coding upstream 30109 6435987 ~ 6436048 (-)
G401482 nsun2 non-coding upstream 160159 6566037 ~ 6567293 (-)
LOC117596453 NA non-coding upstream 173150 6579028 ~ 6581192 (-)
G401486 NA non-coding upstream 179975 6585853 ~ 6586574 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 30806 6371617 ~ 6374500 (-)
G401205 nelfe other downstream 230046 6172988 ~ 6175260 (-)
G400815 NA other downstream 815559 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 1264926 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 1396842 4961102 ~ 5008464 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 848555 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 1463525 7869403 ~ 7917693 (-)
G402673 NA other upstream 2737992 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 2821517 9227395 ~ 9284493 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other upstream 2981117 9386995 ~ 9416253 (-)

Expression


Co-expression Network