G401577


Basic Information

Item Value
gene id G401577
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6920630 ~ 6980575 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU476554
GTGAAAGAAAGATCCGGACTATGAAAGAGCGCAGTGGCTCAAACCTGCCGCATGGTGCTGAGACGAAGCATGCCGAAgagttttctctctttccaataaagttattatttttgcttcttAACCTGCTTTGCATTCAGAGCGGCTCTGGTCTCGTTTTCAGTCGCACTGGCAGCTGAGTgctatcattttttaaaaaaacaatttttgaaGACATTTCCGAAACTTCCCTATAATCTCCAAGGCGCTGAGAAACACAAGGAAAAACAACGCGCCTCTAACTTTTTttttttttttttgcacatatgCAAAATTTGTGTTACTTTGCATCACCA
>TU476559
GTGAAAGAAAGATCCGGACTATGAAAGAGCGCAGTGGCTCAAACCTGCCGCATGGTGCTGAGACGAAGCATGCCGAAgagttttctctctttccaataaagttattatttttgcttcttAACCTGCTTTGCATTCAGAGCGGCTCTGGTCTCGTTTTCAGTCGCACTGGCAGCTGAGTgctatcattttttaaaaaaacaatttttgaaGACATTTCCGAAACTTCCCTATAATCTCCAAGGCGCTGAGAAACACAAGGAAAAACAACGCGCCTCTAACTTTTTttttttttttttcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476554 True 332 lncRNA 0.40 2 6940527 6980575
TU476559 False 298 lncRNA 0.41 2 6920630 6980575

Neighbor

gene id symbol gene type direction distance location
nrsn1l LOC108272414 coding downstream 139707 6775979 ~ 6780923 (-)
ndufs6 ndufs6 coding downstream 175168 6742722 ~ 6745462 (-)
irx1b irx1 coding downstream 237135 6679309 ~ 6683495 (-)
ube2ql1 ube2ql1 coding downstream 309691 6598286 ~ 6610939 (-)
srd5a1 srd5a1 coding downstream 356998 6555953 ~ 6563632 (-)
e2f3 LOC108272398 coding upstream 217786 7198361 ~ 7205064 (-)
srfbp1 srfbp1 coding upstream 226970 7207545 ~ 7213295 (-)
eif3i eif3i,LOC107691510,LOC107709286 coding upstream 473163 7453738 ~ 7464458 (-)
txlna txlna,LOC108433836,LOC107687085,LOC107562872,LOC107576061 coding upstream 486470 7467045 ~ 7476978 (-)
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding upstream 501250 7481825 ~ 7501213 (-)
G401558 NA non-coding downstream 150896 6769532 ~ 6769734 (-)
G401531 NA non-coding downstream 171398 6748993 ~ 6749232 (-)
G401526 NA non-coding downstream 178356 6742057 ~ 6742274 (-)
G401491 NA non-coding downstream 325690 6594708 ~ 6594940 (-)
G401486 NA non-coding downstream 334056 6585853 ~ 6586574 (-)
G401690 NA non-coding upstream 267749 7248324 ~ 7248560 (-)
G401691 NA non-coding upstream 268373 7248948 ~ 7250340 (-)
G401742 NA non-coding upstream 453212 7433787 ~ 7436406 (-)
G401758 NA non-coding upstream 586958 7567533 ~ 7567747 (-)
G401815 NA non-coding upstream 727287 7707862 ~ 7708191 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 546130 6371617 ~ 6374500 (-)
G401205 nelfe other downstream 745370 6172988 ~ 6175260 (-)
G400815 NA other downstream 1330883 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 1780250 5128235 ~ 5140380 (-)
sept7a LOC108272655,LOC108441798,LOC107698647 other downstream 1912166 4961102 ~ 5008464 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other upstream 273858 7254433 ~ 7276782 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 888828 7869403 ~ 7917693 (-)
G402673 NA other upstream 2163295 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 2246820 9227395 ~ 9284493 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other upstream 2406420 9386995 ~ 9416253 (-)

Expression


Co-expression Network