G401811


Basic Information

Item Value
gene id G401811
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7735631 ~ 7738442 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU476826
ctgtacacctgctcacgGTACAAAAAATCTTGCAGCTTCAGTCAATGTTCAGAATTGGGAAGAATGTGACTTTGACCGTGACTTCAATCTGAGGCTACTGAGGCTATCTGATTTGTTGTAGCCCATACACGTCAAGGTTTGGTggtgcatttctgctcaccacggttgtaaagagtggttatttgatttaccatagccttcctgtcacttcaaaccagtctggcgtttctcctctgacctctctctcatcagcaaggcgtttCTGCCTGCataactgctgctcactggatggttttttttttttttccccaacaaaaTTGTGTATGTAAACTCTACGGACTATTGTGTGAAGTTccatgagatcagcagtttctgcagCCCATTTGGCACCATGCGGTCAGTCactcacatttttccccattctgatattcgATGTGAACcctaactgaagctcttaaactgtatctgcatgattttatgcactgcactccCATCAAAtaattgactgattggataattgcatgaatgaccaggtgtactggtgttcctaataaagaggaAAATGAATGTATGTTATATGAATGACCAGTTAATccaataaattatatttgtgttaaTTACTTTGTGTTAATCCCAGAGTTGGTGGCTTTGTGCTCTAATCCACAGAATAATGCAGGGCTAAATCTGTGGGTTGAATATGTTGGTGTGTTGGTCATTGGTTTCCCTTTTTAAAAGTTGGCATTTCTGTCAATCCAGCCAATTAATGCTGATGTCTGTGTCATTGCCCTAGAGCAAGTGCTGATTGCTGACTGCCTAACAGGcttttctattattatattagacACAAGTCCTCAGTGCAGATTTTAATGAGCAATACCGAGCACTCAGGCTCCATCCAACAATTGAGgaagcttgtttgtgtgtgagtaggAGGTGGCCCAATCTGCAAACAGAATAATGAGAAACCGTGAAAGCAGATAAACAGAATATCTCTATAGGGAAAAAAAGCCATTCAGTCCATCTTTCTGCAGTTAATGATGACATACAAGCCCTCTgaatgagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggacaatATGACCTTTATGGCCTATGGCAGCAGGGGTGTGCCTATTATACTTGTGTATCCCATGCACAACCATTTTGAGTGTTTCTGCATTTCTTCCCTCAACATGCTGAGGGTGAGAAATGTGATGTCATGAATGTCATCTAGCACATGTTGTGTTCACACCTCTCTGATGCTTGTATAAAAAAAGACGGTTCTTTAAGCTTGTTTTGGGTGGGTGAaccatttttaaacaaagaaaaaaggtttCCAAGGTCATATCATTGTAAAAGTgaatatatttcaataaaatgtttttatttactttctaaccttgcctaggatatctgcctgcaaagatcatgtttaACAAACGCAGTGATAAAaacagtctgcctaaagataaAACTTTGCTAGATAAGTGTGacttcctcacacagtgaatatcaTGCGTTAATCAAGTTGCTGTATAGCTACGTTCCCTAGTAAAAGGGAGTTAAGCCTAATTGGTTCAGTGTGTAATCAGATGCTGGCTGTTAAAATTTCTGCAACGCCACTGCACCGTCACATCAGCATCAAAACAAAGAGCACATAAAGACTCTGTACAGACTGCAGTGgacaaaaaacactgaaaatgtttaaatgacgcatttaaaataaatttagccACCAGAACTGAGTGAATTATTTGAGTGATTAACTGAGTGATTAATTTCAGCACCGATGATCAGTCGAGTGAAGAGACGATGATGAAGCTCATGTTTAAATGCCACAAGTGACTTTCATCTCAGGTGAtaactgatgtggatgatgctgataatcagtgATGACTGATTTCTcattgtaaacttataattctttaaaatttgttttttccATATGTAGATAATGTTTTTTCCATACGTAGATTAGGTTGTAGAGGTAGGTGGGTGGCTTCGAGTGGGATTACAGTGAAATCTTTTAAtcttatttccttttttgtcactttaaaatgctaggatttacatgcaaatgagacacatttcagttcagagaaatgtgtagttttcagaactatatattaatagaaaatgtcaacatttttatcatgttttatgtaccaaaaatattagattgtaCATTTATCATACCATATTTTTTGTTCCATCACTATGTTCTAATGATCCGTAGATCTCTGTGACCAgctatttttttcacattttgaaatgaaagccTAAGCCTTGTAAAGGTCTTTGACTTTCTAAGCGCTAGATGAATCAAAATGAGTCTTTGTATGTGGAATTTGGCTCGCACAGGCATTTATTCTACTTTAATCTCCTAACCTTTTACTGCACTCTTCTCCCACATCCCGATAAGTATGGGAAAAATGTTCTGGCTCTATTAAAAATTGGATTTAGTGCAACTGACACGTTTGTAAGAaagtcaggcttttttttttttaaagcctgaaAAAGCTGAGGGCTAATGCATGCTGTTTGGAAGGTGGATATTGCAATGTGATTAAATCAGTTAAGCACTAATGAGATGCTCTGCTTGTCATCACTCTCCTGGCTTTGGGGACAGTGAAATACAAAGCTGTGTCAGAGACAAAATATCATCCGTTCGATCTCATTTGTGTTTAATAGATGGATGCATAAATGTCAATGGGTTAAAATGTTGATAGAACGAGACAACTTTGTGCAGTTAAAAGAATAACTGCTGTCACAAAGAAATGAGCGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476826 True 2812 lncRNA 0.38 1 7735631 7738442

Neighbor

gene id symbol gene type direction distance location
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding downstream 234418 7481825 ~ 7501213 (-)
txlna txlna,LOC108433836,LOC107687085,LOC107562872,LOC107576061 coding downstream 258653 7467045 ~ 7476978 (-)
eif3i eif3i,LOC107691510,LOC107709286 coding downstream 271173 7453738 ~ 7464458 (-)
srfbp1 srfbp1 coding downstream 522336 7207545 ~ 7213295 (-)
e2f3 LOC108272398 coding downstream 530567 7198361 ~ 7205064 (-)
khdrbs1b khdrbs1,LOC103045134,LOC103472039,LOC106924560,LOC106945640 coding upstream 6382 7744824 ~ 7756061 (-)
agr2 agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756 coding upstream 43473 7781915 ~ 7784061 (-)
ppp1r10 ppp1r10,LOC107709274,LOC107745712,LOC107691520 coding upstream 50467 7788909 ~ 7798665 (-)
abcf1 abcf1,LOC107745711,LOC107691519 coding upstream 66341 7804783 ~ 7819711 (-)
bag6l bag6,LOC107687076,LOC107745707 coding upstream 106021 7844463 ~ 7858199 (-)
G401815 NA non-coding downstream 27440 7707862 ~ 7708191 (-)
G401758 NA non-coding downstream 167884 7567533 ~ 7567747 (-)
G401742 NA non-coding downstream 299225 7433787 ~ 7436406 (-)
G401691 NA non-coding downstream 485291 7248948 ~ 7250340 (-)
G401690 NA non-coding downstream 487071 7248324 ~ 7248560 (-)
G401812 NA non-coding upstream 168 7738610 ~ 7739244 (-)
G401813 NA non-coding upstream 907 7739349 ~ 7741757 (-)
G401835 NA non-coding upstream 77557 7815999 ~ 7827663 (-)
G402090 NA non-coding upstream 583714 8322156 ~ 8324199 (-)
G402120 NA non-coding upstream 681945 8420387 ~ 8448303 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 458849 7254433 ~ 7276782 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 1361131 6371617 ~ 6374500 (-)
G401205 nelfe other downstream 1560371 6172988 ~ 6175260 (-)
G400815 NA other downstream 2145884 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 2595251 5128235 ~ 5140380 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 130961 7869403 ~ 7917693 (-)
G402673 NA other upstream 1405428 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 1488953 9227395 ~ 9284493 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other upstream 1648553 9386995 ~ 9416253 (-)
si:ch73-347e22.4 NA other upstream 4038927 11777369 ~ 11790179 (-)

Expression


Co-expression Network