G401835


Basic Information

Item Value
gene id G401835
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7815999 ~ 7827663 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU476858
ggcaccctgtccagggtgccCCCctccttgtgccccgagtcccctgagacaggctccaggctaccctgtgaccctgtgtagaataagcagtacagtggatggatggatggacatattgaattttttatccatttatagttacttttagtGTTCTGAAAGTCCATGATGCAAATTAGTTCTCGGTATCACTCTATGTTATA

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU476858 True 200 lncRNA 0.46 2 7815999 7827663

Neighbor

gene id symbol gene type direction distance location
ppp1r10 ppp1r10,LOC107709274,LOC107745712,LOC107691520 coding downstream 17334 7788909 ~ 7798665 (-)
agr2 agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756 coding downstream 31938 7781915 ~ 7784061 (-)
khdrbs1b khdrbs1,LOC103045134,LOC103472039,LOC106924560,LOC106945640 coding downstream 59938 7744824 ~ 7756061 (-)
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding downstream 314786 7481825 ~ 7501213 (-)
txlna txlna,LOC108433836,LOC107687085,LOC107562872,LOC107576061 coding downstream 339021 7467045 ~ 7476978 (-)
bag6l bag6,LOC107687076,LOC107745707 coding upstream 16800 7844463 ~ 7858199 (-)
pip4p2 tmem55a,LOC107702130 coding upstream 99782 7927445 ~ 7938210 (-)
smap2 smap2 coding upstream 566860 8394523 ~ 8417397 (-)
col16a1 col16a1,LOC108272916 coding upstream 624423 8452086 ~ 8544860 (-)
adgrb2 adgrb2 coding upstream 787342 8615005 ~ 9005331 (-)
G401813 NA non-coding downstream 74242 7739349 ~ 7741757 (-)
G401812 NA non-coding downstream 76755 7738610 ~ 7739244 (-)
G401811 NA non-coding downstream 77557 7735631 ~ 7738442 (-)
G401815 NA non-coding downstream 107808 7707862 ~ 7708191 (-)
G401758 NA non-coding downstream 248252 7567533 ~ 7567747 (-)
G402090 NA non-coding upstream 494493 8322156 ~ 8324199 (-)
G402120 NA non-coding upstream 592724 8420387 ~ 8448303 (-)
G402122 NA non-coding upstream 606181 8433844 ~ 8436904 (-)
G402129 NA non-coding upstream 621832 8449495 ~ 8508126 (-)
G402142 NA non-coding upstream 693695 8521358 ~ 8522044 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 539217 7254433 ~ 7276782 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 1441499 6371617 ~ 6374500 (-)
G401205 nelfe other downstream 1640739 6172988 ~ 6175260 (-)
G400815 NA other downstream 2226252 5587398 ~ 5589747 (-)
LOC113543870 LOC108272368,LOC108261349,LOC108261350 other downstream 2675619 5128235 ~ 5140380 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other upstream 41740 7869403 ~ 7917693 (-)
G402673 NA other upstream 1316207 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 1399732 9227395 ~ 9284493 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other upstream 1559332 9386995 ~ 9416253 (-)
si:ch73-347e22.4 NA other upstream 3949706 11777369 ~ 11790179 (-)

Expression


Co-expression Network