G402090


Basic Information

Item Value
gene id G402090
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 8322156 ~ 8324199 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU477147
acacacacacacacacacacacgctgcacatgcactcacaagatttaaaatggtttaggtgaataataaaaactgacataaatacataaataagttaaatattCCACTTTAAAATGAgtgcaaaaaatgttttttttttttgttttgttttttttggtcgAAATCAACCACAAATGATAATGATAGGCACATGAAATATACACAACTGCTCAACTGGTGCAACATCCATTCCAAAATGGATCACAATCTCACACCACATTATATCCATTAATCCTAATATGCAATTTACAGTTATCTTTGATGTAAACATACACTGCAAATCTGAGCTTCTAAACCCCTTAATCATAattacattgaaaaaaaatcagcaaccGTTGTTTGGGAGGATGTAAACAAATAGTATGATATAAACCATGCAAGTCTACTGCTAGAAAGATGATAGATAGATTGTTCAGTCTAGGCTGACAATGTTTGCTGTAAAAGGTTCAAGTATGGTGGCTGAAAAGTACAAAgtacattaacaaaccaaaatgcAAGAGACAATCCGAGAACAGACCAAAACTAAAAACACTACCGCAAAACTAACAAAtctacagtgaaactaacaaCAGTACAGCAAAACTAACAACACTGCAGCAAAACTATagacactacagcaaaactatagacactacagcaaaacta
>TU477149
aacactacagcaaaactatagacactacagcaaaactatagacactacagcaaaactataaacactgcagcaaaactatagacactacagcaaaactatagACACTACAGCAAAACAAACCACACTACAGCAAACACAAACcacactacagcaaaactatagacactacagcaaaactataaacactacagcaaaactatagacactacagcaaaactataaacactacagcaaaactatagacactacagcaaaactatagacactacagcaaaactatagacactgcagcaaaactatagacactacagcaaaactatagacactgcagcaaaactatagacactgcagcaaaactatagacactacagcaaaactatagacactacagcaaaactatagacactacagcaaaactata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU477147 True 684 lncRNA 0.33 2 8322519 8324199
TU477149 False 421 lncRNA 0.36 2 8322156 8323077

Neighbor

gene id symbol gene type direction distance location
pip4p2 tmem55a,LOC107702130 coding downstream 383946 7927445 ~ 7938210 (-)
bag6l bag6,LOC107687076,LOC107745707 coding downstream 463957 7844463 ~ 7858199 (-)
abcf1 abcf1,LOC107745711,LOC107691519 coding downstream 502445 7804783 ~ 7819711 (-)
ppp1r10 ppp1r10,LOC107709274,LOC107745712,LOC107691520 coding downstream 523491 7788909 ~ 7798665 (-)
agr2 agr2,LOC108273355,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756 coding downstream 538095 7781915 ~ 7784061 (-)
smap2 smap2 coding upstream 70324 8394523 ~ 8417397 (-)
col16a1 col16a1,LOC108272916 coding upstream 127887 8452086 ~ 8544860 (-)
adgrb2 adgrb2 coding upstream 290806 8615005 ~ 9005331 (-)
lratd2a LOC108272401 coding upstream 1257013 9581212 ~ 9582892 (-)
fam91a1 fam91a1,LOC107724353,LOC107702086 coding upstream 1262109 9586308 ~ 9612307 (-)
G401835 NA non-coding downstream 494493 7815999 ~ 7827663 (-)
G401813 NA non-coding downstream 580399 7739349 ~ 7741757 (-)
G401812 NA non-coding downstream 582912 7738610 ~ 7739244 (-)
G401811 NA non-coding downstream 583714 7735631 ~ 7738442 (-)
G401815 NA non-coding downstream 613965 7707862 ~ 7708191 (-)
G402120 NA non-coding upstream 96188 8420387 ~ 8448303 (-)
G402122 NA non-coding upstream 109645 8433844 ~ 8436904 (-)
G402129 NA non-coding upstream 125296 8449495 ~ 8508126 (-)
G402142 NA non-coding upstream 197159 8521358 ~ 8522044 (-)
G402405 NA non-coding upstream 287919 8612118 ~ 8614804 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 404463 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 1045374 7254433 ~ 7276782 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 1947656 6371617 ~ 6374500 (-)
G401205 nelfe other downstream 2146896 6172988 ~ 6175260 (-)
G400815 NA other downstream 2732409 5587398 ~ 5589747 (-)
G402673 NA other upstream 819671 9143870 ~ 9161470 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other upstream 903196 9227395 ~ 9284493 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other upstream 1062796 9386995 ~ 9416253 (-)
si:ch73-347e22.4 NA other upstream 3453170 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 3821399 12145598 ~ 12256372 (-)

Expression


Co-expression Network