triqk (triqk,LOC107710222,LOC107724370,LOC107702072)


Basic Information

Item Value
gene id triqk
gene name triqk,LOC107710222,LOC107724370,LOC107702072
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 9386995 ~ 9416253 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU477891
CAGCCGCATTCCCGCTGAGCTTGCGTAGACTGAATCAGGAACTGGATGTAGAAAAGATTTCTCTATCTGggAAAAATGGCGAAGAAAGATGCGAGCACTGCAAAGTTACCAGTCGATCAGTACCGCAAACAGATCGGAAAGCAGGATTATAAGAAAACCAAGCCGGCTTTGCGAGCCACACGACTGAAGGCCGAGGCAAAGAGGAGCGCTCCGGGAATCAGGGACACCATCTTGGTGATCATGGCCGTGCTGGTCTTCCTGCTGGGGGTTTACGCCTTCTTCTACCTCAACCTGAGCACCGAGCTGAACCTGGACACGGACCTGGACTAAAGAACCCGAAAGAGCACAAAGGAATCTGCGAGAATGGAGGCTGTGTTACAATCAGAACGTGTTCTACTCCAACAGAACCTCTCAGTGCCCTTCTTGCCTGCTAAGAACCCAGCGATTGGACCCTAGGTTTTGTCTTTGAAGATGCTGACCATCTGCTTTTGCACATGTTATGAATGGTAATACTTTCCTATGGGattaaaagttaattaattGAGGGTTGTTACTCAAAATCCAGGTTACCATATGTGGCTTTTAGGAGTCTAAGGAGTGAACCACGATTAAGTCTTTCCTTGCttaatgctatttttttctgttccagtgctttctttgtttttatatcttctgggatttatGGAAatctttcagtgttttttttctccacagctcAGGATATTAAAGACGTAAGGCCAACTGAGTGTGTCTGaagaatactgtgtgtgtgtgtgtagaggcaTTGCCCATCTTATTAGAACCTTAAATAATCACTGTCTACGAATCGCTAGCAATAAAAGACATCATTTTGTCATGAAGATCTTAGTGTGCTCTCTGCTTATAATAGTCTGTGAGCCCTCTGTTACTTAAGAACCTGCATGGTTCATGTGTATACATGTGGGAAATATAATGCTTGACATTCCAGAtgaatttggattttttttgtatattggAATTCATGCAAACATTCAGAACTGACTTGTTTTAGTCCAGAGTCTGGAAGTTGGATAACGGTATTATTGCCTTTGTGAAACTTCTTTTGCTCAGGATTAGTGTTCAGCACATTTTGCTAGGAAGGATCACTGttttcatcagtggatgttcaatTCAAAGAAATGTATTTGTACTCCATTTGTTTTGAAGGATTTTGATGGACCACAATAAAACATGAACTGTTTAT
>XM_026942443.2
GCAGCTTGAAGAACTGAGTGGGCGGGGAAACGACGCTGATAGGCTGCAGCCGCATTCCCGCTGAGCTTGCGTAGACTGAATCAGGAACTGGATGTAGAAAAGATTTCTCTATCTGggAAAAATGGCGAAGAAAGATGCGAGCACTGCAAAGTTACCAGTCGATCAGTACCGCAAACAGATCGGAAAGCAGGATTATAAGAAAACCAAGCCGGCTTTGCGAGCCACACGACTGAAGGCCGAGGCAAAGAGGAGCGCTCCGGGAATCAGGGACACCATCTTGGTGATCATGGCCGTGCTGGTCTTCCTGCTGGGGGTTTACGCCTTCTTCTACCTCAACCTGAGCACCGAGCTGAACCTGGACACGGACCTGGACTAAAGAACCCGAAAGAGCACAAAGGAATCTGCGAGAATGGAGGCTGTGTTACAATCAGAACGTGTTCTACTCCAACAGAACCTCTCAGTGCCCTTCTTGCCTGCTAAGAACCCAGCGATTGGACCCTAGGTTTTGTCTTTGAAGATGCTGACCATCTGCTTTTGCACATGTTATGAATGGTAATACTTTCCTATGGGattaaaagttaattaattGAGGGTTGTTACTCAAAATCCAGGTTACCATATGTGGCTTTTAGGAGTCTAAGGAGTGAACCACGATTAAGTCTTTCCTTGCttaatgctatttttttctgttccagtgctttctttgtttttatatcttctgggatttatGGAAatctttcagtgttttttttctccacagctcAGGATATTAAAGACGTAAGGCCAACTGAGTGTGTCTGaagaatactgtgtgtgtgtgtgtagaggcaTTGCCCATCTTATTAGAACCTTAAATAATCACTGTCTACGAATCGCTAGCAATAAAAGACATCATTTTGTCATGAAGATCTTAGTGTGCTCTCTGCTTATAATAGTCTGTGAGCCCTCTGTTACTTAAGAACCTGCATGGTTCATGTGTATACATGTGGGAAATATAATGCTTGACATTCCAGAtgaatttggattttttttgtatattggAATTCATGCAAACATTCAGAACTGACTTGTTTTAGTCCAGAGTCTGGAAGTTGGATAACGGTATTATTGCCTTTGTGAAACTTCTTTTGCTCAGGATTAGTGTTCAGCACATTTTGCTAGGAAGGATCACTGttttcatcagtggatgttcaatTCAAAGAAATGTATTTGTACTCCATTTGTTTTGAAGGATTTTGATGGACCACAATAAAACATGAACTGTTTATGAATGTA

Function

symbol description
triqk Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human TRIQK (triple QxxK/R motif containing).

NR:

description
triple QxxK/R motif-containing protein

GO:

id name namespace
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU477891 False 1222 TUCP 0.42 4 9387002 9416207
XM_026942443.2 True 1275 mRNA 0.42 4 9386995 9416253

Neighbor

gene id symbol gene type direction distance location
adgrb2 adgrb2 coding downstream 381664 8615005 ~ 9005331 (-)
col16a1 col16a1,LOC108272916 coding downstream 842135 8452086 ~ 8544860 (-)
smap2 smap2 coding downstream 969598 8394523 ~ 8417397 (-)
pip4p2 tmem55a,LOC107702130 coding downstream 1448785 7927445 ~ 7938210 (-)
bag6l bag6,LOC107687076,LOC107745707 coding downstream 1528796 7844463 ~ 7858199 (-)
lratd2a LOC108272401 coding upstream 164959 9581212 ~ 9582892 (-)
fam91a1 fam91a1,LOC107724353,LOC107702086 coding upstream 170055 9586308 ~ 9612307 (-)
spire1a LOC108273070 coding upstream 211040 9627293 ~ 9669455 (-)
si:ch211-215i13.3 NA coding upstream 256521 9672774 ~ 9678951 (-)
atp6v1c1b atp6v1c1,LOC108273274,LOC108424992,LOC102305030,LOC102207943,LOC100703061 coding upstream 265660 9681913 ~ 9693188 (-)
LOC113543915 NA non-coding downstream 9956 9376926 ~ 9377039 (-)
G402674 sfpq,LOC106570021 non-coding downstream 245172 9139017 ~ 9141823 (-)
G402405 NA non-coding downstream 772191 8612118 ~ 8614804 (-)
G402142 NA non-coding downstream 864951 8521358 ~ 8522044 (-)
G402129 NA non-coding downstream 878869 8449495 ~ 8508126 (-)
G402892 NA non-coding upstream 203877 9620130 ~ 9620599 (-)
G403080 NA non-coding upstream 314430 9730683 ~ 9731257 (-)
G403072 NA non-coding upstream 343392 9759645 ~ 9760497 (-)
G403086 NA non-coding upstream 348421 9764674 ~ 9764904 (-)
G403134 NA non-coding upstream 446780 9863033 ~ 9863314 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 102502 9227395 ~ 9284493 (-)
G402673 NA other downstream 225525 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 1469302 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 2110213 7254433 ~ 7276782 (-)
polr1h znrd1,LOC107677479,LOC107754832,LOC107584303,LOC107694346 other downstream 3012495 6371617 ~ 6374500 (-)
si:ch73-347e22.4 NA other upstream 2361116 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 2729345 12145598 ~ 12256372 (-)
G404644 NA other upstream 3014742 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 3099063 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 3154211 12570464 ~ 12570536 (-)

Expression


Co-expression Network