G402892


Basic Information

Item Value
gene id G402892
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 9620130 ~ 9620599 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU478003
AAGCTGGCACGTAACGCCTGCAACATGTCATTAAGTGTGTCCATGTCTTGAATGACCACCTCCATAGTCATGTCTGATTCCATTTCAGTGCCTGGAAACATGAGTCAGCCAGCACATTAAGTGTTGAGGAGAAATATAATACAGCATATGTTACTTACAGTAACACTCTGATGTGTTAAAATTGCATAACTCTAAATACTAAACTGTCTGCACTTATTCAGATCACACCTCCAACTGTTCTTAAAGCAAAGTccattaaaatgatcatttaaatcAGGAATGACATTCATGACAGTAATTTGGTTTCATGGATCTGAATCAGTAACGGATAGAAAATTTGCAATTCAAAACATTTGCAGACTacaacaagcacacacaagcacgATCTGAGCTTGAAGTGTATATGAGAAATATCATTATGCTGGGAGCTAACATCAGCACTGAGGTTCAGCTCGACACCTGCTGTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU478003 True 470 lncRNA 0.39 1 9620130 9620599

Neighbor

gene id symbol gene type direction distance location
fam91a1 fam91a1,LOC107724353,LOC107702086 coding downstream 7823 9586308 ~ 9612307 (-)
lratd2a LOC108272401 coding downstream 37238 9581212 ~ 9582892 (-)
adgrb2 adgrb2 coding downstream 614799 8615005 ~ 9005331 (-)
col16a1 col16a1,LOC108272916 coding downstream 1075270 8452086 ~ 8544860 (-)
smap2 smap2 coding downstream 1202733 8394523 ~ 8417397 (-)
spire1a LOC108273070 coding upstream 6694 9627293 ~ 9669455 (-)
si:ch211-215i13.3 NA coding upstream 52175 9672774 ~ 9678951 (-)
atp6v1c1b atp6v1c1,LOC108273274,LOC108424992,LOC102305030,LOC102207943,LOC100703061 coding upstream 61314 9681913 ~ 9693188 (-)
txnl4a txnl4a,txnl4a.S,txn4a,LOC106570226,LOC106570228 coding upstream 75465 9696064 ~ 9700029 (-)
adnp2b LOC108273309 coding upstream 81205 9701804 ~ 9711107 (-)
LOC113543915 NA non-coding downstream 243091 9376926 ~ 9377039 (-)
G402674 sfpq,LOC106570021 non-coding downstream 478307 9139017 ~ 9141823 (-)
G402405 NA non-coding downstream 1005326 8612118 ~ 8614804 (-)
G402142 NA non-coding downstream 1098086 8521358 ~ 8522044 (-)
G402129 NA non-coding downstream 1112004 8449495 ~ 8508126 (-)
G403080 NA non-coding upstream 110084 9730683 ~ 9731257 (-)
G403072 NA non-coding upstream 139046 9759645 ~ 9760497 (-)
G403086 NA non-coding upstream 144075 9764674 ~ 9764904 (-)
G403134 NA non-coding upstream 242434 9863033 ~ 9863314 (-)
G403164 NA non-coding upstream 276297 9896896 ~ 9897124 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 203877 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 335637 9227395 ~ 9284493 (-)
G402673 NA other downstream 458660 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 1702437 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 2343348 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 2156770 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 2524999 12145598 ~ 12256372 (-)
G404644 NA other upstream 2810396 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 2894717 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 2949865 12570464 ~ 12570536 (-)

Expression


Co-expression Network