G403072


Basic Information

Item Value
gene id G403072
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 9759645 ~ 9760497 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU478200
tcagactgttacaaagcactgacgctggagactccttccataagtgctCCACTATATCATATATTTCTTAGTTAAATAacagccatacaagtccctgtgaataagctgttgctatagaaacgataacgtattagaacgagcgcattaatgtaaaacTGTGACTTAACTTATAGCCAAtgcttctgtcagagctgctgttatagaaaattaatcaacacctACAAATGATCACAGGTCTCCATAAGAGCTGAAGCAAACttaaaaaagcacaaacacctttacatttcatgtttatttccAAATTCATCTCAAAAGGTACACTGTCTCTTACtttcaacatttaaaatgtgctgGAGCACCGCAGTCTAAATTTCTAAAAGCTGCTTAGGACAAATAcagtttgatgaaaaaaaaacctgtataacaataataataatattaataataacaataataataaaaattgtaaaacagCTACACAGTAAAAAGCATTTAACatcacaaataaagaaaaataaaactggcAAGTGAAGAAATGTACAAAAGTCTGCAGGACAAAGGACAGAAGATGTAACAAgcgagtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgtgagagagagagacagagagagagtactgGTAAGCTGCCTAATCGAACATATCGTCGTCATCATCGTCAGACTCGGCGAAGTACTTGACCTCTTTCTTGGCTCGACCTGACCGGTCACGGGCTGTGTCCAAGCGGCTGAAACTCTTACTGTTcacttcatcttcatcctcgTCTGACGCTGccttcttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU478200 True 824 lncRNA 0.38 2 9759645 9760497

Neighbor

gene id symbol gene type direction distance location
adnp2b LOC108273309 coding downstream 48538 9701804 ~ 9711107 (-)
txnl4a txnl4a,txnl4a.S,txn4a,LOC106570226,LOC106570228 coding downstream 59616 9696064 ~ 9700029 (-)
atp6v1c1b atp6v1c1,LOC108273274,LOC108424992,LOC102305030,LOC102207943,LOC100703061 coding downstream 66457 9681913 ~ 9693188 (-)
si:ch211-215i13.3 NA coding downstream 80694 9672774 ~ 9678951 (-)
spire1a LOC108273070 coding downstream 90190 9627293 ~ 9669455 (-)
LOC113543808 rarb,LOC107103632 coding upstream 387 9760884 ~ 9903805 (-)
nr1d2b nr1d2,nr1d2b,LOC108273061,LOC106570286 coding upstream 294521 10055018 ~ 10069626 (-)
rpl15 rpl15 coding upstream 319989 10080486 ~ 10084170 (-)
ube2e1 ube2e1,LOC108272959,LOC105903698,LOC107743927,LOC107655879,LOC107565235 coding upstream 335627 10096124 ~ 10113933 (-)
LOC113543865 LOC108272957,LOC101471788,LOC102229941,LOC105937694 coding upstream 361046 10121543 ~ 10182766 (-)
G403080 NA non-coding downstream 28388 9730683 ~ 9731257 (-)
G402892 NA non-coding downstream 139046 9620130 ~ 9620599 (-)
LOC113543915 NA non-coding downstream 382606 9376926 ~ 9377039 (-)
G402674 sfpq,LOC106570021 non-coding downstream 617822 9139017 ~ 9141823 (-)
G402405 NA non-coding downstream 1144841 8612118 ~ 8614804 (-)
G403086 NA non-coding upstream 4177 9764674 ~ 9764904 (-)
G403134 NA non-coding upstream 102536 9863033 ~ 9863314 (-)
G403164 NA non-coding upstream 136399 9896896 ~ 9897124 (-)
G403262 NA non-coding upstream 174492 9934989 ~ 9952324 (-)
G403316 nkiras1,LOC102786732 non-coding upstream 330072 10090569 ~ 10094630 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 343392 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 475152 9227395 ~ 9284493 (-)
G402673 NA other downstream 598175 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 1841952 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 2482863 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 2016872 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 2385101 12145598 ~ 12256372 (-)
G404644 NA other upstream 2670498 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 2754819 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 2809967 12570464 ~ 12570536 (-)

Expression


Co-expression Network