G403324 (sf3a3)


Basic Information

Item Value
gene id G403324
gene name sf3a3
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 10189171 ~ 10191189 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU478510
aaaaaaaaaaaaaaaaaaaaaaaaaaacaataactgcAGATGCAACAGTGAGTGAAGGTGCAGTACCTCATTCGGATGTTTCCTGTGGAATTCCTTAATCTGTTTCAGCCGGTTGTAGAATTCAGCAAACTCATTTGGCCCGGATATGGCACTCAGCTCTTCCTTTCTCAAACCATCTTTGTCCTCATACGCATCTCTGAGGTTTGCACTCACTTCCATGTACCTGTCCAACATGGCTCGTATACGATGATCAGAATTAATCTGGTCACGCAGCGTCGTTTTCTTGTGTAGCATCTCCTTTGTTTTGGCGTCCATTAATCTCTCCTTCTCCTCATGGTAGCGACGCTGCTGCTCTAAAATAGGCTCCATGATCACAATATTTACTTAATAACAGCAATAGGAGAAAGAGACTCGATCAGATTATACTGATCCACTCCAGTCCCTAACTAGCCGGATTATTTAGCTAGTTTACGCGCGTGCAACGACTCAG

Function

symbol description
sf3a3 Predicted to enable RNA binding activity. Acts upstream of or within hematopoietic stem cell differentiation. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Orthologous to human SF3A3 (splicing factor 3a subunit 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU478510 True 490 lncRNA 0.42 4 10189171 10191189

Neighbor

gene id symbol gene type direction distance location
LOC113543865 LOC108272957,LOC101471788,LOC102229941,LOC105937694 coding downstream 6405 10121543 ~ 10182766 (-)
ube2e1 ube2e1,LOC108272959,LOC105903698,LOC107743927,LOC107655879,LOC107565235 coding downstream 75238 10096124 ~ 10113933 (-)
rpl15 rpl15 coding downstream 105001 10080486 ~ 10084170 (-)
nr1d2b nr1d2,nr1d2b,LOC108273061,LOC106570286 coding downstream 119545 10055018 ~ 10069626 (-)
LOC113543808 rarb,LOC107103632 coding downstream 285366 9760884 ~ 9903805 (-)
si:ch211-30b16.2 si:ch211-30b16.2,LOC108273305,LOC108441689,LOC107569868,LOC107686956,LOC107719841,LOC107708724,LOC107693995 coding upstream 12624 10203813 ~ 10214881 (-)
cited4a LOC108273161 coding upstream 221196 10412385 ~ 10415718 (-)
stmn1a stmn1,LOC108415666,LOC101477131,LOC102781761,LOC100709328 coding upstream 800523 10991712 ~ 10996996 (-)
LOC113543771 oprd1a,LOC108272459,LOC108411271,LOC105903674,LOC107689567,LOC107732912,LOC107595906,LOC107688080 coding upstream 1052316 11243505 ~ 11274312 (-)
LOC113543744 fam46bb,LOC108273300,LOC108413340,LOC105903734,LOC107712594,LOC107700817,LOC107737782 coding upstream 1193004 11384193 ~ 11397339 (-)
G403323 NA non-coding downstream 5603 10182837 ~ 10183568 (-)
G403316 nkiras1,LOC102786732 non-coding downstream 94541 10090569 ~ 10094630 (-)
G403262 NA non-coding downstream 236847 9934989 ~ 9952324 (-)
G403164 NA non-coding downstream 292047 9896896 ~ 9897124 (-)
G403134 NA non-coding downstream 325857 9863033 ~ 9863314 (-)
LOC113543816 NA non-coding upstream 311122 10502311 ~ 10507050 (-)
LOC117596479 NA non-coding upstream 312100 10503289 ~ 10503361 (-)
LOC113543917 NA non-coding upstream 312604 10503793 ~ 10503874 (-)
LOC113543919 NA non-coding upstream 312999 10504188 ~ 10504325 (-)
LOC113543918 NA non-coding upstream 313859 10505048 ~ 10505185 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 772918 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 904678 9227395 ~ 9284493 (-)
G402673 NA other downstream 1027701 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 2271478 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 2912389 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 1586180 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 1954409 12145598 ~ 12256372 (-)
G404644 NA other upstream 2239806 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 2324127 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 2379275 12570464 ~ 12570536 (-)

Expression


Co-expression Network