LOC113543816


Basic Information

Item Value
gene id LOC113543816
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 10502311 ~ 10507050 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU478677
GCCGCTCTTttgcttcctcttcttcttcctgcaGGCTGGAGCTGTAATGGTCGTTTGGTGTGTTCCGAGTACTTGATGCCGtcctgaagaagaaaatgaCCTGCTAACTGATGAGCGCCGTTGGCTGAAATTCAGATGCGATGACTCTGAAGTCATAATAAAGATGATCGCAAGATAATCTTGCTGAAAGGCAGACAAGATGATCCTGGAGTCTAACTTACAAAGGTGATGAATCTGCAGTCTGAGGTGTTGGATGTCCATTTTGACAGACAGGATGGTGTCTGATACTTGACTTGGGACCATGTCGTACTCCTTACCACAGGAGTGACTGGATGAAGTGCTGATGGATGCAGAATTAAGGAGCTGTGCACCAGAGAGGGGCAGATGAGCAAGCAGGAGTGACGAGACCACTGGAATCTCACAAACCCACCTTCCTGGTTACGTAGACTCTACACTCaatgtgttatttaatcatCTAATTAGCAACACGAGGGGATCAGAGGGGAAAGTGAGCCTATACTATGCATACTGTGCCTGTGTAACCCATTTCTAACCAATAAAATGtcct
>XR_003404446.2
AGCCAATCAGCGTGTAGAAGCTGCACACATAAGAGGAAACGCCGCTCTTttgcttcctcttcttcttcctgcaGGCTGGAGCTGTAATGGTCGTTTGGTGTGTTCCGAGTACTTGATGCCGtcctgaagaagaaaatgaCCTGCTAACTGATGAGCGCCGTTGGCTGAAATTCAGATGCGATGACTCTGAAGTCATAATAAAGATGATCGCAAGATAATCTTGCTGAAAGGCAGACAAGATGATCCTGGAGTCTAACTTACAAAGGTGATGAATCTGCAGTCTGAGGTGTTGGATGTCCATTTTGACAGACAGGATGGTGTCTGATACTTGACTTGGGACCATGTCGTACTCCTTACCACAGGAGTGACTGGATGAAGTGCTGATGGATGCAGAATTAAGGAGCTGTGCACCAGAGAGGGGCAGATGAGCAAGCAGGAGTGACGAGACCACTGGAATCTCACAAACCCACCTTCCTGGTTACGTAGACTCTACACTCaatgtgttatttaatcatCTAATTAGCAACACGAGGGGATCAGAGGGGAAAGTGAGCCTATACTATGCATACTGTGCCTGTGTAACCCATTTCTAACCAATAAAATGtcctgaaatttaaaaaaaagtctgttttattGAACCAGAATAATGATATTGGCTGGATATCTTGTTTCTATGTAGAGGGTTAAACTAGTTCAAATGGTGCTGTGCAAAAGCAGGGCACTTCTACTTGTACTGCATTAATGGTTTGTTCATTATGATGAGCTCCCTGAGGAAAGGTGCAGAGCAGGAGTGAGAGGAAGGAATGACAAAAGAGTGGAAGACAGGAACTGTGTAGAATGGGATGAAGCTGTAGCTGGAGGCCAGATTGGACAGAGTCTCTTCTCCTGGGTTTTATTATAAcgataaaataaatttttaaacaaacatggataaatgtataaattatgcaGTTGACCGTTACACATTTTTGCCTACTACCGTTTCTTAATACAAGTTAAAGCTGCACAGGACACAGTCAAAATACAACAAACCTGAATTCACTTGTTTAGACAATAAGATAGTATTACACTTGTGcagctgaaaataaaacatgcttttGCAGTAACCAGCAGATgcttgatgaaaaaaatgaaaaatgtacaccTTCTCCAATAAACTTTCAATAAAACAGGCTATTAAAAATCA

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
TU478677 False 568 lncRNA 0.46 7 10502889 10507010
XR_003404446.2 True 1186 lncRNA 0.41 7 10502311 10507050

Neighbor

gene id symbol gene type direction distance location
cited4a LOC108273161 coding downstream 86593 10412385 ~ 10415718 (-)
si:ch211-30b16.2 si:ch211-30b16.2,LOC108273305,LOC108441689,LOC107569868,LOC107686956,LOC107719841,LOC107708724,LOC107693995 coding downstream 287430 10203813 ~ 10214881 (-)
LOC113543865 LOC108272957,LOC101471788,LOC102229941,LOC105937694 coding downstream 319545 10121543 ~ 10182766 (-)
ube2e1 ube2e1,LOC108272959,LOC105903698,LOC107743927,LOC107655879,LOC107565235 coding downstream 388378 10096124 ~ 10113933 (-)
rpl15 rpl15 coding downstream 418141 10080486 ~ 10084170 (-)
stmn1a stmn1,LOC108415666,LOC101477131,LOC102781761,LOC100709328 coding upstream 484662 10991712 ~ 10996996 (-)
LOC113543771 oprd1a,LOC108272459,LOC108411271,LOC105903674,LOC107689567,LOC107732912,LOC107595906,LOC107688080 coding upstream 736455 11243505 ~ 11274312 (-)
LOC113543744 fam46bb,LOC108273300,LOC108413340,LOC105903734,LOC107712594,LOC107700817,LOC107737782 coding upstream 877143 11384193 ~ 11397339 (-)
LOC113543901 LOC108273294,LOC108413341,LOC107550656,LOC107737765,LOC107700701 coding upstream 912103 11419153 ~ 11430318 (-)
trnaa-ugc_19 NA coding upstream 933614 11440664 ~ 11440735 (-)
G403324 sf3a3 non-coding downstream 311122 10189171 ~ 10191189 (-)
G403323 NA non-coding downstream 318743 10182837 ~ 10183568 (-)
G403316 nkiras1,LOC102786732 non-coding downstream 407681 10090569 ~ 10094630 (-)
G403262 NA non-coding downstream 549987 9934989 ~ 9952324 (-)
G403164 NA non-coding downstream 605187 9896896 ~ 9897124 (-)
LOC117596414 pkib,LOC108249014 non-coding upstream 500570 11007620 ~ 11021628 (-)
LOC117596478 NA non-coding upstream 613519 11120569 ~ 11131188 (-)
G403715 NA non-coding upstream 631732 11138782 ~ 11139126 (-)
G403717 LOC107675819,LOC107719741,LOC107739129,LOC107589765 non-coding upstream 643757 11150807 ~ 11151179 (-)
G403823 NA non-coding upstream 704836 11211886 ~ 11213838 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 1086058 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 1217818 9227395 ~ 9284493 (-)
G402673 NA other downstream 1340841 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 2584618 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 3225529 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 1270319 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 1638548 12145598 ~ 12256372 (-)
G404644 NA other upstream 1923945 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 2008266 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 2063414 12570464 ~ 12570536 (-)

Expression


Co-expression Network