G403851


Basic Information

Item Value
gene id G403851
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11395737 ~ 11396040 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU479143
ATTTAATCTAGGTATCTAAATTACTGTATACGTTTAATCTAGGTATCTGACAGTTATGACATTATGCTGGTCCCCACAAAGGAGACTTGctttatttaacagttttattaaacaaataaaacagcaaaaagctgcagctttatttaaaaaaacaattaaaggaGGCTTTTGGTtcctgaggttaaggttaggattagATTTAGGCACAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU479143 True 211 lncRNA 0.33 2 11395737 11396040

Neighbor

gene id symbol gene type direction distance location
LOC113543771 oprd1a,LOC108272459,LOC108411271,LOC105903674,LOC107689567,LOC107732912,LOC107595906,LOC107688080 coding downstream 121425 11243505 ~ 11274312 (-)
stmn1a stmn1,LOC108415666,LOC101477131,LOC102781761,LOC100709328 coding downstream 398741 10991712 ~ 10996996 (-)
cited4a LOC108273161 coding downstream 980019 10412385 ~ 10415718 (-)
si:ch211-30b16.2 si:ch211-30b16.2,LOC108273305,LOC108441689,LOC107569868,LOC107686956,LOC107719841,LOC107708724,LOC107693995 coding downstream 1180856 10203813 ~ 10214881 (-)
LOC113543865 LOC108272957,LOC101471788,LOC102229941,LOC105937694 coding downstream 1212971 10121543 ~ 10182766 (-)
LOC113543901 LOC108273294,LOC108413341,LOC107550656,LOC107737765,LOC107700701 coding upstream 23113 11419153 ~ 11430318 (-)
trnaa-ugc_19 NA coding upstream 44624 11440664 ~ 11440735 (-)
trnap-ugg_24 NA coding upstream 45475 11441515 ~ 11441586 (-)
LOC113543760 grb10a,LOC108273075,LOC108440880,LOC107739542,LOC107667783,LOC107565574,LOC107656633 coding upstream 52415 11448455 ~ 11498259 (-)
LOC113543737 NA coding upstream 121890 11517930 ~ 11523343 (-)
LOC117596437 NA non-coding downstream 32781 11327698 ~ 11362956 (-)
LOC117596438 NA non-coding downstream 135346 11256791 ~ 11260391 (-)
G403823 NA non-coding downstream 181899 11211886 ~ 11213838 (-)
G403717 LOC107675819,LOC107719741,LOC107739129,LOC107589765 non-coding downstream 244558 11150807 ~ 11151179 (-)
G403715 NA non-coding downstream 256611 11138782 ~ 11139126 (-)
G403893 NA non-coding upstream 135253 11531293 ~ 11533016 (-)
G403981 tpm3,LOC100305075,LOC107748711,LOC107693397,LOC108440886 non-coding upstream 272723 11668763 ~ 11696191 (-)
G403982 NA non-coding upstream 283215 11679255 ~ 11680996 (-)
G404060 NA non-coding upstream 367071 11763111 ~ 11765767 (-)
G404198 NA non-coding upstream 425010 11821050 ~ 11821426 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 1979484 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 2111244 9227395 ~ 9284493 (-)
G402673 NA other downstream 2234267 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 3478044 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 4118955 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 381329 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 749558 12145598 ~ 12256372 (-)
G404644 NA other upstream 1034955 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 1119276 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 1174424 12570464 ~ 12570536 (-)

Expression


Co-expression Network