G403981 (tpm3,LOC100305075,LOC107748711,LOC107693397,LOC108440886)


Basic Information

Item Value
gene id G403981
gene name tpm3,LOC100305075,LOC107748711,LOC107693397,LOC108440886
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11668763 ~ 11696191 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU479297
TGACATTTAAAAtcatggattttattttaaaaaaatgcatcattacAAAGACAGTAACAGTGATTATATAAGCATTTTGGACTTTTCCAGttaaaataagcatttttaatcttttatttacttttacttttaaatgttacCTTTTTCTCTTGGTTTCTGGGCCAGAAATGATCTTACTCCTTAGATATGTATTACTTAGAGGTCGCAAAACGAAACATCTGGCAGTGACGCCACttagttgtgtgtaaaaatcccttGCTCCTATTGGGAGCTTATTTTTCTATTGCTCTATTAAAAGCAGGCATGCAAAGTCCATCATTGTTCATGAATGCTTAGCAATGTCAGGCCTGGGTGTTTGCCGTGAGCCCTTAACAGTGGTGTGTTTCACATGTAGTGGTTCAAACAAGGCAAGTGGGTTTTACTGTTAAAACAGTGACAAACGTCGTGCCTGGACACATTACATAGAattgaacttaaaaaaaaaaaaaaattaaaggctCTCATTTTGAAACCTGACCATTTTAAGACATCACTTGTAGAAATGGTCCCAAAAGCCTGCATGAAGAAGACAGAAAATGGCAATAGGTAGGGAAGAAAAATGATAGGTGCATCCGCACAGACGTTTACCACAGAGCAAAGATTATACTCAAAGGTGCCTAAATAGTAGCACAAAAAAGGCTTTTAGGGAAGGATGATGTCTAGAGACCATGTTGATGTTTGTGGAGGAAAGGGATAAACTAAAGTGAACTATACCTAAGCTTTGTCACAACCAAAGCAACACACATTGAAAGCCTCAGATGAAACATCTCAGGGATTTGGCACATAAGAAAAGCACCAATACAGAAAAGGTCTTCTGAATTCTGACAAACACAATACACAGAGACACTTCAGGGCCAGAGAGGTGCTAATATGCCATGTAAAGCTCCACACTCAAGACTCAGTGAACAGTTCTGGAAAAGGAAAATATGCAGAGAGCTGTGCTGCCAGAGCTGGTTGGTTCTGTGAGCTCAGCTTTAACAAAAAGTGGGGTGAAGGGAGGGGAAAGGAGGAAGAAAACAACTTCGAGCGAATTAGACAACTTGAACCGAATTAGAGACATGAGATGAGTGTGTTGAAAAGGGGAACGGGGGAATGTCCTGGTCCAGGACGTTTAGAAACTGTTCAGTTCGCACAGGGTCTGGTCCAGAGTGGCATGGATCTTGATGTTCTCCTCCTTGGCGTCTTTTAGCTTTTCTGCAAGGCGAGGACACAAAAAAATAGGATTTGAACCAATTTCTGAACcagtttcaatatttttttgttacacaaaactcacacatgtaaaataatcacttttctaaaaaatataaaaggaaACCATATACAATAGAATTATCCTATATtcaattagaaaaataatcagaaaatgtCAAGGGGTagagaaagaagcagaaaagaCAGAAGGGATACAGAATGACCAGGGTTCAGGATAAGAGTTGCAAAGAGAAATAACATTGAGGGTCCATTTGTGGTATGTCATACGTATACCTTTTAACCGTTTACTGTTACATTtataatgttgtagaacatccacaaaacaagttcttgGTGAACTCTGTAGCATAACTGGCTTAACTTATGATCAGGATTACAAGATGGATCTCTTATGTAGGACCACACAGATatccaatcagaatcaggatcTACATCTGAGCAGTGTTACCCTGAGATATTATCCAGTGGATAAAAGTGCAAGTACAAGATGCCTTCAGCAAGAACAGACACTGTACTCTTAGTCTTTCTCTACACAGTGGCTAGGGTTGTTGCCTTgtagaatggtcagactggctGTGGTCAGTTCtagctgacaggaagcctaCAGTAATTtaaacaaccactctttacaaccgtggtaagcagaaaagcatctcatcagATTCCTCTCCAAGGAGCCAATGACAGGAATCTGAAGCCACAGTGGGCACAGCTTCACCAATACTGTTGAACAGCTGGagtttggaaaaacatcatctgGTCAGTTTCCAGGTTGTgtgttccgagatgcttttcagtTCACCACAGTTGCAAAGAGTGTTTGAGTTACTCTAGCCTTCCTGTccgctcaaaccagtctggccattctcctctgaactcGCTAATCAACACggtgtttatagctgcagaactgctgctcattggatgttttctgtttttcacactattctgtgtaatctctagagactgtcctgtgtgaaaattccaggagttcggcagtttctgaaatgctcagaTCAGTCCCTCTGGCAgcaacaaccataccacagttaaagtcacagagatagcacatttccacattctgatgtttgatgtgaacattaacagaagctcttgaGATGAAGTATTTTAGGCCTTTCCttgctgccaaatgattggctgattatgATTATTCATTCAATTTTCCAATCAGGTATACATTATTTGTAATAAACTGGCTGATGAGTGTATATGTGAAAGTGTGAACCAACTGCATTTATTACAGTCTCTTTTGATCACTATCCATGTCTATATGTGATTAGAAAGTACTGAAagttatattttacaatttgaTTTAACTGATtcccaaatatttaaaatactgcACAATGGGAACATTAGTAAGAATAGTTAATGCCTTACCAGCTTCATTCTTTAAGGTAGAAGGACAAACTCAGACCAATTCATATTAAAGCCTGATCAGCATTCTCATAAATGGACAAAGGGCATATCCATTATAatctattacattatttatatcaaCTGAAAAGAAAGTGTGGCAAGTCTGTACTTTCTGACTTTACATGCTCTTCTCTCCAGTCTAAAACCTCTCCTTTCAGGGTTACATCAATGAACACACACCCTTTTCACAAGACTGTCAGATTCCATGGATAATAATACTGTGAGGAATTGCGTGTTATAGTTTTATGCGCTTGCAATGTGGTCAATCTGGTCTTTCTGTATACTACTGACTCCAACGCATTCTACTGATCCAAATCAGCATACTGATTCATCTTAGGATTTTATAACCAGATCTTAGAGTTTAGATATATGAAGTTTTTCAAAATACTTGAAGGTCTTCAAAAGAAGAGAAGTTGATATAGCCATTTCAAGGACAGCAagtttaaacacactgacgagtTCCGTTTCTCTTTAAGACCTTCTGCCGTCGGCGTGACTGTCGTCATGATCTGCACCTCAAATCAAAAACCTTTTCcgtacattcaaaaatatttactaatctagaaaatgcAGAAGAACGTCACTCAAAACAGATCTTACGGGAGGAacactaactgtaaGAGGAAAATCATTAGTGTTACTCAATAAGGGTTTAGAGTAGTACAcaagtatgcgatttgagacaggttagtttgtttattcaccTGTGTTTATGTCACATGGTGCTGCCTCCACTATTTGCGTTGGTATCGCACCACACGGACACGTCACATTGATTTCTGAGGACGTGCACAAGCGACGTGCCAAACGACCGCAGGATGTGTGTGGCGGCCATCTTGCGTACGCGTGTTTAACGGCAAGTACAAATTGGCCTTTACCGGGTTTTCTACTAGTGTGCAGCTTTTGAAACATGTGGGAGAAGAGGATGAGAACAGGGTGGGGGAAAAATTTGGAAACCTGTGTAATCAATGCCACCCTGTGTGTACGCTGAGGCATAGGGCGAAGTTATTTATGATCTATTAGACCCTCCCTCCTATAAAGTCCAAATGGAATAAAGGCAAAATTAACCTGTTTACTCAAGGCACTAATTTGCaatttgaggggaaaaaaaaattcatggttttaatatttatgcagTGATTGACCTATGAAAGACcaagtaatttttattttaattttctaccTTTGTGTGGTGTGTCCCTGTACAAATACTCAGTAGCTATTTCACTCCATTTCCATAGAAGCCTTTTGTCAATGTAGCTACCTGCACTAGATATTTTAAGCAGCAAGAAAGTAACcagatataaataatataatttaaacacaTTCCTTACtccttaatgtttttgttttcccaAAACAGATAAACCTCATTAGTCTGctctagcattttttttgtccaattttTGTTCTTGATACTGACTCAGAAGGTCAGAAGGTGTCCAGTTCCATAACAGTGTAGTTTCAACTCCGACTCAAATCACAGGCTTCTGTTAACGCACTTGTTCtatgttttatcatttctatagtaacagttaacAGACACAACATGGCGTTCAttactaaatttaaaattggcaaattgctgtggtataagaggaataaaacacagtttagGACATGATATTACTGGCTTCATCTCAggccatcacaccaccacactgttgattattttcctacagcaggacaacccatcatgttttattcctacatAATGAAGTGTAACTCACTCCAGTTCAAGTCACATAGGACAATAAGAatatgatgatggt
>TU479299
TGTCCTACTACATGTGGCACAGTTAATAATCCTTCTACTATGAAGAGATTGTACTCTGGGCAACTCTTTGTAACtctgacattaaaaaataaataaataaaaaaattaaatttatccACAATAATTTTTCCAGTCAGTATCTCTTCCCAACACGGCACATGGAGAATGATCTCGTGTAGGATGACTTTATGGCTGCATTTGAAATCAAACACgatttttccccttcttttgCCTTTGCTCAAGATAATTCTTTGAATTAATCAAGAAGCCATTTTTGTCTGAGGAGCAGGGGGTATAACTATTAACTGAGCTCAATAAGccagactttctttctttttttataaacaaacctGGCTAATTTGCATTAATTTGGGTTCCAAGAAGAAAGCTAACCTTAATTCCCAGTCAGTTACTATGGCAACAAATGCTTTAGGCAAATGTGTTCAGCTAATACAACCATGCACATAGTCATGAACGTTTTGCCACGTCACTGGCTAATAAACTGCTGGCACATACGTTACGCATGGTGTAGCCCAACACGCTTAAATATTaggatataattattaaaaaatatatatattaagaatatataaaataaaattacctTACATATAGGctcttctttttgttctttggaTATGGATAATATATAAATGCCACTAAGCCACAAGAAGACATAAAAGCGATCTAAATCAGCCAAATGTAGTTCATGGTTTTTGACATTCGTTGATAACCATCACAATAAGAACAGAGGTCTAGAGTGAAGGTTACTGCATGAGCAACCATGTCATGCCTGTTTGGTGAAAATCCAGCGGTTGAGGGAGTGTGTACTGCGGAAAGTGTTCACGCCACCAACGCCTACATGGGTTTGGGATGGGAAAGATCCTCTCGCATTTCCTGAGGCGATCTTGTGATCATAATTGTGAATGATTTAACTGCTATAGATTACTGTAGTAATCACTTTGAACCTATACTGAAAACAAATATCCTTATATGCATTGCTCTAGGCTCTTCTTTGCATTTCTTTAGAGCTGAGGAAGCAGTAATGCAACGTATGATGTGAAAGTTGAAATTCACTCACTTGTATCCTTATTATATTTACTACTAGCTAAAATATGTCATGCGGTTCATTTCTGTGACTTTCCCTTCAGCTAAGTATTCATCTAGGTTTGCACTTACCATTCTGAGATCATTTAAATCATTATCATTGACCTACTCATGTTTATTCCTCTGCTCATGTTGCACTTAAATCCATAACGTCAATGAAAAATGTAACACTTGTTATATAATGCCTTGTTGAATTATTTGGACTAATTAGAAATAACTTCCCCTGTGTTCTTAGCCTACTCAGTAAAGTAGTGTGTAAATACCTAGAAATGCCTGCAAGTGTTTTAGAGACTTCTAATGATTTCTTATATATTCTGTTGGCTATTTTCTGCTAGGCTTTTCTTTCCATGGCTTTATTAATACTCAACGAATACTATTTCATAATTGTGTATTGTGGAGTTTAATAGTTCATTGTGTATAAGCTCGACGTGGAGCCTTTAACTGACACGTTGTTGTTGTCAGGCCTGCTTTAACATGGCATGCAAGTGCTTGAGCCTCGATTACTACATCTTCGCTTGAATTAGTGGGAACATGTCGCAGCTGGCGTTCATCAGGGGAACACACTGAGCCTGGAGTGTTCGGTAAGGCTAGTTTAAGTGAGGCCATCATAAATAAGCCTGGATTTTATGAGCTCGCTTCATGAGCTTTGTTAAGTTTGCTTAACAAAAGAACAAGACTAAGAGACAAAAAACTCGCAATAAGGACGTATAGCTAAAGAGCATTTACATGCATTTCTGTTGAGgtggaatatttaaatatattttaaaaagggaTGTAAAAATATACTGGATTTTTGCTGAACACCCCACCGCGATTTTATTGTCTATGCATAACAGAGCTACACTTTTGACTTCTAGGACAGATGAGCTCTGGATAAACTCATTAGCGACTCAGGATGAGCGCTCCCTTCCCTCCTTTTGTTTACAGCCCCATAAAGCTCAATGTAATGTGAATAAATATGTTCAGCCTTTCGGTGTGGATGATGAAACACAGCTGCATAACCAGGAAAAGGCCACTTGTGACGGCATCCTATCATTTTATGTCCACATGACTGGGCAGCAGTTCCTGGCTGTAGAATGAAATGGATTTCATTGGCTAAGGAAAAGGGAGGAGGTCGGACGTTTCTTCAAAATATAGAcgctattaatattattatacagtggGACAGTGTTTCCCAATCCAGCAGTTATATTTCAGTGCTTCAactcaaacacacctgatttcACTCAACATGGAGACGTTCTTTAAGTTTCACCACCAGAATCAGGAAAGGGAAACACTGCACTACAGGAAAAGGAATTACACtttttaacttattattattatgagtgtATCTGTTCACTAATCTGGTTATAGTCATGAGTTAGTTAGAGAACACCAACAATCATTTAGTGTTATCTTCACTAAGACCATGCATGTCCTCAATCCCTCTTCTCTCCAATgcattaatattgtttttccCAATCATTTCTGTAGGTCGCTGCATTTTTGGTTTCgggcagtgtgttttggtatctggggttgggggtgttTCTAAAGCATTTTAAGATATGCGTCACAGAGACATGTCCATATTAACCAGTGCTCCAATACACAAGACCTCCATGAGACATAAAACATGAatccactgattttttttttttaaacaataattataCTTACAGATAATCAGAATGAACCCTAACAAGCAGTTTATTCACCATCCCACTGTCTTGGGtcacattttttattctgttttactgtattattattttctttttaagtaaACTGTATCGCAAGTACAGATGGACCTATGTCCACGGTCCCCATCACACATAGCAGAGAAATCTGTGCCAAATATGGTTGAGTTTATACACATAAAAGCCGGTATGACAATGTCTGGGCTTTAGTTTCCGTTCTAATGATTACACGCGGTGTTTTAGAGGTGAACCGGACTGAAGTCATGCGATGCCTATTGGATATACGGCTGCTATGCGCTTATGCAACATGTCTGGTGTGAATTCCAGGTAATGCTGTGCGGTTTGCGCAGGCTGAAAGAAATGAAGCAGTGGGATATATACGGCTTACGAGCCTTGCGTTTGCCACCTGGATAACAGAACATAAAATAAGGCTCGCgagacacaaatacacacacgctGGTCCCCAAAAGATTCATGCAGCACACACTCCCTACCTTCTCAGCCTGAGCCTCCAGACTCTTTAGATTGTTGGTGACATTTTTcagctcctcctccagctcGGCGCATTTACTGAAAGCAGGACGGGCATTTTTGATTTTGGGAAAAAGCAGGAAGAgaaatagggggaaaaaagagggagaaaagggCATGAAGGGAAGAATAAGCAAAAGAAATAGAACATATACAAAGTCAGTGAAGAACAAAGCTCAGAAGTGGACAGTAAGAAGAGCTGCAGGTGATGAACAGTCCTTAAAGGCAGCAACGTGAAGTGACATTGTGAAGCCTGTATTTACATTTCCCAGAAACTTGAGAGGAATCTACAAGTGCATTTTCACCATGGTGTAATTGAGCAAGGCAAAGGTCCTACATCTAAGTTTCAAACCGTGTGTATTCAGATCTTCAGCTGTGTGAGCCGTTGGCAAATGCACAGCGTGACAATGGTAATGTGGCACTGACATGCGAGAAGCACTTGTTCATGCTTGTTCATGCTGTGAGGAGCTGGCTACATTCTCAGTCTAAACAATCCAGCACACAGAATGCTGGCTGCAACAGTGTTAGCCAAGATAAAgtaggaggaagagaaagaaacagtcTGAAAGGTACACAGAACAGCACAAGCAGAGATCGAAGATGGCCATCGCTGGAGGAAAGAGCCTGGTTGACTTTTTCTAGACTTTAAACTCCCCCTCTATTCGTCCCAAAACACAAAATGATGACCCTCACTAACAGAGGATCTCCagagtatacacacacacacacagcacttctACCTTGTCCTCAGAAGCATGCAGAGTCTTCAGTGTTTGGTCCAGGACCCTTAGCTCCTCCTCCAACTGCTTCTTTTTAGCCTCGGCGAGCTCGGCTCTCTCCTCAGTGCGCTCCAGCTCTCCCTCAACGATCACCAGCTTACGAGCcacCTCCTCGTATTTGCGGTCGGCCTCCTCAGCAATGTGCTTGGCCTCCTTCAGCTGGATCTCCTGTAACTCCATCTTCTCCTCATCCTTCAGTGCCCTGTTCTCAATCACCTTCATGCtgtttGCTTCTTTCCTCGGCTGCTTTCCTGTCGGTCTCGGCCTGCTCTGCCTGGTCCAGAGCATTCTCCTTATCCAACTTCagcatcatcatcttcttcttgaTGGCCTCCATCTTGGCTGTGGTGAGTGGTGCTCAAAGTACGAGGATCagaacaagtaaaaaaaaaaaaaaaaaagtggtcaaATGAGGAGTGTGGTGATTCTTGAAAAGCAGGAGGGGATCAGGTAGAAGGATGGAGCTCAAAGACTTTGACAAAGAGGTTGAGagcaagaggaagaaaagaggaagGGAGTGAAGGAAAAGGAGCCCAAACTCAGCAAGAGATAAGGGGAGGGCCTTTATATCTGGGGGGCA
>TU479300
TGACATTTAAAAtcatggattttattttaaaaaaatgcatcattacAAAGACAGTAACAGTGATTATATAAGCATTTTGGACTTTTCCAGttaaaataagcatttttaatcttttatttacttttacttttaaatgttacCTTTTTCTCTTGGTTTCTGGGCCAGAAATGATCTTACTCCTTAGATATGTATTACTTAGAGGTCGCAAAACGAAACATCTGGCAGTGACGCCACttagttgtgtgtaaaaatcccttGCTCCTATTGGGAGCTTATTTTTCTATTGCTCTATTAAAAGCAGGCATGCAAAGTCCATCATTGTTCATGAATGCTTAGCAATGTCAGGCCTGGGTGTTTGCCGTGAGCCCTTAACAGTGGTGTGTTTCACATGTAGTGGTTCAAACAAGGCAAGTGGGTTTTACTGTTAAAACAGTGACAAACGTCGTGCCTGGACACATTACATAGAattgaacttaaaaaaaaaaaaaaaaaaaaaaaaaaacatgtcaaataATATGTCACAAAAAATTGTGAAACAAGGTCAGTAGATGGTTAAAATAATATTGATAGCTGTATGTTCTTCCCATGAAGCTCAGAGGAAGACTTGCTCATAGAGTCTTGTGCTTCGGCAGAGTAGCCACTGTCCCATTTAGCTATTCTAGGGTCAAGTTCTATGTTCtggacagcagaagaccattAGCAGTGTGAAACATGTTCTCGAGCTTCTGCAGATGACTCACTCTCCTCAGGAATGTCTTGCAAAT

Function

symbol description
tpm3 Predicted to enable actin filament binding activity. Acts upstream of or within skeletal myofibril assembly. Predicted to be active in actin filament. Is expressed in several structures, including adaxial cell; alar plate midbrain region; axis; brain; and musculature system. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion and nemaline myopathy 1. Orthologous to human TPM3 (tropomyosin 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU479297 False 4466 lncRNA 0.39 2 11691704 11696191
TU479299 True 4676 lncRNA 0.41 6 11671667 11688373
TU479300 False 764 lncRNA 0.36 2 11668763 11696191

Neighbor

gene id symbol gene type direction distance location
si:ch73-109i22.2 NA coding downstream 116584 11541444 ~ 11552179 (-)
LOC113543691 LOC108272892 coding downstream 139727 11525516 ~ 11529036 (-)
LOC113543737 NA coding downstream 145420 11517930 ~ 11523343 (-)
LOC113543760 grb10a,LOC108273075,LOC108440880,LOC107739542,LOC107667783,LOC107565574,LOC107656633 coding downstream 170504 11448455 ~ 11498259 (-)
trnap-ugg_24 NA coding downstream 227177 11441515 ~ 11441586 (-)
LOC117596452 LOC108273353 coding upstream 27386 11723577 ~ 11732473 (-)
apoea LOC108272669 coding upstream 96029 11792220 ~ 11794417 (-)
LOC113543858 LOC108272670 coding upstream 103305 11799496 ~ 11809781 (-)
trnay-gua_12 NA coding upstream 114192 11810383 ~ 11810470 (-)
trnay-gua_13 NA coding upstream 115686 11811877 ~ 11811964 (-)
G403893 NA non-coding downstream 135747 11531293 ~ 11533016 (-)
G403851 NA non-coding downstream 272723 11395737 ~ 11396040 (-)
LOC117596437 NA non-coding downstream 305807 11327698 ~ 11362956 (-)
LOC117596438 NA non-coding downstream 408372 11256791 ~ 11260391 (-)
G403823 NA non-coding downstream 454925 11211886 ~ 11213838 (-)
G404060 NA non-coding upstream 66920 11763111 ~ 11765767 (-)
G404198 NA non-coding upstream 124859 11821050 ~ 11821426 (-)
G404235 NA non-coding upstream 274551 11970742 ~ 11970964 (-)
G404241 NA non-coding upstream 300879 11997070 ~ 11997470 (-)
G404243 NA non-coding upstream 304075 12000266 ~ 12000510 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 2252510 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 2384270 9227395 ~ 9284493 (-)
G402673 NA other downstream 2507293 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 3751070 7869403 ~ 7917693 (-)
fndc5b fndc5b,LOC108272379,LOC108433842,LOC107584283,LOC107691512,LOC107687074,LOC107562878,LOC107709291 other downstream 4391981 7254433 ~ 7276782 (-)
si:ch73-347e22.4 NA other upstream 81178 11777369 ~ 11790179 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 449407 12145598 ~ 12256372 (-)
G404644 NA other upstream 734804 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 819125 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 874273 12570464 ~ 12570536 (-)

Expression


Co-expression Network