G404198


Basic Information

Item Value
gene id G404198
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11821050 ~ 11821426 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU479573
ttttttttttatcaagctATTGTAAACCATGGAACTGAGACCttcattgtttgttttatcataAAGTGGATTTTTAGGTTAAACAAGCTTGTGCAAGATGAATTTTCCATCGTGGGAAAAAGCTTTGACTTACAGTGACTCATATGAAAGTGTGTTAAATGGACTGTAGAGGGCGGTACACGTGCAGAAAGTCGAGAACATGAATGAGGTTGGAAAGTGAATTCACTCTGGGGGTGAATGAGTGTTTGGGTGGGTTGGGACACACACAGCTCCGTATGACGACTGGGAGATCTCTCAAAGGGGCGGAACCTTgtaaccaactgccaatcactgaagATAACTCGCTAGTCTAGTGTTTCcttaaatcactttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU479573 True 377 lncRNA 0.41 1 11821050 11821426

Neighbor

gene id symbol gene type direction distance location
trnay-gua_19 NA coding downstream 86 11820877 ~ 11820964 (-)
trnay-gua_18 NA coding downstream 1579 11819384 ~ 11819471 (-)
trnay-gua_17 NA coding downstream 3076 11817887 ~ 11817974 (-)
trnay-gua_16 NA coding downstream 4580 11816383 ~ 11816470 (-)
trnay-gua_15 NA coding downstream 6078 11814885 ~ 11814972 (-)
trnay-gua_20 NA coding upstream 951 11822377 ~ 11822464 (-)
trnay-gua_21 NA coding upstream 2450 11823876 ~ 11823963 (-)
tomm40l tomm40,LOC108272662,LOC108444390,LOC105028272,LOC106588243,LOC105902030 coding upstream 10780 11832206 ~ 11842945 (-)
LOC113535038 LOC108272660,LOC108444404,LOC103037120,LOC100707815,LOC101472794,LOC103393952,LOC106588242,LOC103360126 coding upstream 23127 11844553 ~ 11863767 (-)
lipea LOC108272659,LOC108444403 coding upstream 46206 11867632 ~ 11882509 (-)
G404060 NA non-coding downstream 55283 11763111 ~ 11765767 (-)
G403981 tpm3,LOC100305075,LOC107748711,LOC107693397,LOC108440886 non-coding downstream 124859 11668763 ~ 11696191 (-)
G403982 NA non-coding downstream 140054 11679255 ~ 11680996 (-)
G403893 NA non-coding downstream 288034 11531293 ~ 11533016 (-)
G403851 NA non-coding downstream 425010 11395737 ~ 11396040 (-)
G404235 NA non-coding upstream 149316 11970742 ~ 11970964 (-)
G404241 NA non-coding upstream 175644 11997070 ~ 11997470 (-)
G404243 NA non-coding upstream 178840 12000266 ~ 12000510 (-)
G404282 NA non-coding upstream 304031 12125457 ~ 12125840 (-)
G404421 NA non-coding upstream 453842 12275268 ~ 12275502 (-)
si:ch73-347e22.4 NA other downstream 30871 11777369 ~ 11790179 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 2404797 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 2536557 9227395 ~ 9284493 (-)
G402673 NA other downstream 2659580 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 3903357 7869403 ~ 7917693 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 324172 12145598 ~ 12256372 (-)
G404644 NA other upstream 609569 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 693890 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 749038 12570464 ~ 12570536 (-)
trnav-cac_23 NA other upstream 750167 12571593 ~ 12571666 (-)

Expression


Co-expression Network