G404243


Basic Information

Item Value
gene id G404243
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12000266 ~ 12000510 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU479624
ctttgactgtcgactcgcttcttatttctgcagcgaaacccagcagccttcatgatgtttttatctgaaaagtgtctcttatggaatctgctgctttctttactgacatacaaacatttttctgtaacatttcattttgtgctggaaaactaatgtttggaatctaaaatgtttttgtactgaagcaataatgtagaagtcagaaaatacaaatctataacaaagtttgtactaaaaaaaaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU479624 True 245 lncRNA 0.32 1 12000266 12000510

Neighbor

gene id symbol gene type direction distance location
usf2 usf2,LOC108273297,LOC107739527,LOC107656615,LOC107724110,LOC107693382 coding downstream 4274 11983194 ~ 11995992 (-)
ago3b ago3b,LOC108272767,LOC103367052,LOC107379323,LOC108413244,LOC106605151,LOC100706402,LOC108444400,LOC103034630,LOC567622,LOC106582842 coding downstream 61845 11911671 ~ 11938421 (-)
lipea LOC108272659,LOC108444403 coding downstream 117757 11867632 ~ 11882509 (-)
LOC113535038 LOC108272660,LOC108444404,LOC103037120,LOC100707815,LOC101472794,LOC103393952,LOC106588242,LOC103360126 coding downstream 136499 11844553 ~ 11863767 (-)
tomm40l tomm40,LOC108272662,LOC108444390,LOC105028272,LOC106588243,LOC105902030 coding downstream 157321 11832206 ~ 11842945 (-)
LOC113535156 LOC108272362 coding upstream 506 12001016 ~ 12004480 (-)
slc2a3a slc2a3a,LOC108273342,LOC108439890,LOC107739512,LOC107693366,LOC107724104,LOC107665492,LOC107589470 coding upstream 27711 12028221 ~ 12059395 (-)
si:dkey-14o18.2 si:dkey-14o18.2,LOC108272430,LOC108439891,LOC107589391,LOC107693367,LOC107599522,LOC107724105 coding upstream 72414 12072924 ~ 12084163 (-)
cacng8a LOC108272562,LOC107724111,LOC107589386,LOC107739619,LOC107693368,LOC108439892,LOC107656603,LOC107599529,LOC103022608 coding upstream 107388 12107898 ~ 12119870 (-)
dbpa LOC108272905,LOC101068247 coding upstream 291232 12291742 ~ 12307057 (-)
G404241 NA non-coding downstream 2796 11997070 ~ 11997470 (-)
G404235 NA non-coding downstream 29302 11970742 ~ 11970964 (-)
G404198 NA non-coding downstream 178840 11821050 ~ 11821426 (-)
G404060 NA non-coding downstream 234499 11763111 ~ 11765767 (-)
G403981 tpm3,LOC100305075,LOC107748711,LOC107693397,LOC108440886 non-coding downstream 304075 11668763 ~ 11696191 (-)
G404282 NA non-coding upstream 124947 12125457 ~ 12125840 (-)
G404421 NA non-coding upstream 274758 12275268 ~ 12275502 (-)
G404667 NA non-coding upstream 513961 12514471 ~ 12515210 (-)
G404681 NA non-coding upstream 574570 12575080 ~ 12577284 (-)
G404682 NA non-coding upstream 576022 12576532 ~ 12578806 (-)
si:ch73-347e22.4 NA other downstream 210087 11777369 ~ 11790179 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 2584013 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 2715773 9227395 ~ 9284493 (-)
G402673 NA other downstream 2838796 9143870 ~ 9161470 (-)
tmem64 tmem64,LOC107696193,LOC107584320 other downstream 4082573 7869403 ~ 7917693 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other upstream 145088 12145598 ~ 12256372 (-)
G404644 NA other upstream 430485 12430995 ~ 12483898 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 514806 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 569954 12570464 ~ 12570536 (-)
trnav-cac_23 NA other upstream 571083 12571593 ~ 12571666 (-)

Expression


Co-expression Network