G404667


Basic Information

Item Value
gene id G404667
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12514471 ~ 12515210 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480108
agtaaagtCAGTTAACTAATTTACTCATACTGTGATCATTTcaatcatttgaaaaaaaaaacaaacaaactgaagtATTGATAAATTTtgcattataaattataactataaattgtgcattattttattgtCGAGACAGACCGGATGACTGTGGACATAATAGATGAAACTGAAGGAAAGAAGGTGCTATTAATTGATTGTAGGCTTTGTTCTAATTATTTGAAGAGTTTGTTGTTTACTAGGTGGATAATAGACAAGGAATAATTCTCTCTAATGCAGGGTTAATCCTGtgtttaaatagtaataaagtccATTATGCAACTtgagcaacatttttttaataactaaagtattatacaaaataaaaatgtctagaagGTGGGAAAAGGCTTTATGAAGATGGTAATATTGTAATGGGAATGGAGAGATGTCATATATGCATTATTACTACCTTACATAAGAGAAATTTGATAGATTGATTGTTTAGTTTTGGTTTAGAAAGGGAGATTTAAACCATGACCCTATAAAAAGAACTTACATTCTAAAACAGCAAGTGATATAAGTGACCTGTTATGATAGTGGATATCATGCTCCAACctatgtgtatatttttatgtgtTGTAAATAAAAACCTTACTGTGAGTAACTCGCACTGTATGATTAGAAGTTGTCAAACTAGAGCAAATGAagaatcacactcacacacacacacacacacacacttgcaaacACAATACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480108 True 740 lncRNA 0.30 1 12514471 12515210

Neighbor

gene id symbol gene type direction distance location
styk1a LOC108273367 coding downstream 32329 12465737 ~ 12482142 (-)
zgc:194578 LOC108273361 coding downstream 52115 12447738 ~ 12462356 (-)
si:ch211-232m10.6 LOC108272566,LOC108439912,LOC101076817 coding downstream 74124 12434972 ~ 12440347 (-)
ccdc106b cc106,LOC108273335 coding downstream 87082 12420503 ~ 12427389 (-)
u2af2b u2af2,u2af2b,LOC103026862,LOC107656609,LOC108439900 coding downstream 99679 12399540 ~ 12414792 (-)
si:ch211-288g17.3 LOC108273223 coding upstream 121640 12636850 ~ 12649319 (-)
kmt2ba LOC108272954,LOC107701550 coding upstream 172552 12687762 ~ 12724515 (-)
ndufv1 ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 coding upstream 246502 12761712 ~ 12770681 (-)
hcn3 hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422 coding upstream 256711 12771921 ~ 12783866 (-)
si:ch211-81a5.8 NA coding upstream 275586 12790796 ~ 12793315 (-)
G404421 NA non-coding downstream 238969 12275268 ~ 12275502 (-)
G404282 NA non-coding downstream 388631 12125457 ~ 12125840 (-)
G404243 NA non-coding downstream 513961 12000266 ~ 12000510 (-)
G404241 NA non-coding downstream 517001 11997070 ~ 11997470 (-)
G404235 NA non-coding downstream 543507 11970742 ~ 11970964 (-)
G404681 NA non-coding upstream 59870 12575080 ~ 12577284 (-)
G404682 NA non-coding upstream 61322 12576532 ~ 12578806 (-)
G404687 NA non-coding upstream 74062 12589272 ~ 12591533 (-)
G404692 NA non-coding upstream 86422 12601632 ~ 12635213 (-)
LOC113535190 NA non-coding upstream 147801 12663011 ~ 12677646 (-)
G404644 NA other downstream 30573 12430995 ~ 12483898 (-)
grin2da LOC108272392,LOC108439895,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 other downstream 258099 12145598 ~ 12256372 (-)
si:ch73-347e22.4 NA other downstream 724292 11777369 ~ 11790179 (-)
triqk triqk,LOC107710222,LOC107724370,LOC107702072 other downstream 3098218 9386995 ~ 9416253 (-)
runx1t1 runx1t1,LOC107702085,LOC107653844 other downstream 3229978 9227395 ~ 9284493 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other upstream 106 12515316 ~ 12553760 (-)
trnav-cac_22 NA other upstream 55254 12570464 ~ 12570536 (-)
trnav-cac_23 NA other upstream 56383 12571593 ~ 12571666 (-)
trnav-cac_24 NA other upstream 58389 12573599 ~ 12573671 (-)
trnav-aac_24 NA other upstream 59530 12574740 ~ 12574815 (-)

Expression


Co-expression Network