G404681


Basic Information

Item Value
gene id G404681
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12575080 ~ 12577284 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480124
CTCAGAAGCAGGCAGAGAAGCCTATGGCACAATCTGCTGAATGCATATTCAAGCAAGTCATTTGCAGGCCTTCCTGTTCTGTTGTTCCACTGCCTTTCAGTAACAGCCTTCTTGTGATTGCCGTGCTTGAACATCCTGGTTAAAGGTAGTGCgttggccgggaatcgaacccgggtcaACTGCTTGGAAGGCAGCTATGCTCACCACTATACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480124 True 213 lncRNA 0.50 2 12575080 12577284

Neighbor

gene id symbol gene type direction distance location
styk1a LOC108273367 coding downstream 92938 12465737 ~ 12482142 (-)
zgc:194578 LOC108273361 coding downstream 112724 12447738 ~ 12462356 (-)
si:ch211-232m10.6 LOC108272566,LOC108439912,LOC101076817 coding downstream 134733 12434972 ~ 12440347 (-)
ccdc106b cc106,LOC108273335 coding downstream 147691 12420503 ~ 12427389 (-)
u2af2b u2af2,u2af2b,LOC103026862,LOC107656609,LOC108439900 coding downstream 160288 12399540 ~ 12414792 (-)
si:ch211-288g17.3 LOC108273223 coding upstream 59566 12636850 ~ 12649319 (-)
kmt2ba LOC108272954,LOC107701550 coding upstream 110478 12687762 ~ 12724515 (-)
ndufv1 ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 coding upstream 184428 12761712 ~ 12770681 (-)
hcn3 hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422 coding upstream 194637 12771921 ~ 12783866 (-)
si:ch211-81a5.8 NA coding upstream 213512 12790796 ~ 12793315 (-)
G404667 NA non-coding downstream 59870 12514471 ~ 12515210 (-)
G404421 NA non-coding downstream 299578 12275268 ~ 12275502 (-)
G404282 NA non-coding downstream 449240 12125457 ~ 12125840 (-)
G404243 NA non-coding downstream 574570 12000266 ~ 12000510 (-)
G404241 NA non-coding downstream 577610 11997070 ~ 11997470 (-)
G404687 NA non-coding upstream 11988 12589272 ~ 12591533 (-)
G404692 NA non-coding upstream 24348 12601632 ~ 12635213 (-)
LOC113535190 NA non-coding upstream 85727 12663011 ~ 12677646 (-)
G404719 NA non-coding upstream 108906 12686190 ~ 12686468 (-)
G404799 NA non-coding upstream 240300 12817584 ~ 12942105 (-)
trnav-aac_24 NA other downstream 265 12574740 ~ 12574815 (-)
trnav-cac_24 NA other downstream 1409 12573599 ~ 12573671 (-)
trnav-cac_23 NA other downstream 3414 12571593 ~ 12571666 (-)
trnav-cac_22 NA other downstream 4544 12570464 ~ 12570536 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other downstream 21320 12515316 ~ 12553760 (-)
trnav-cac_25 NA other upstream 304 12577588 ~ 12577660 (-)
trnav-aac_26 NA other upstream 1445 12578729 ~ 12578801 (-)
trnav-cac_26 NA other upstream 2296 12579580 ~ 12579651 (-)
G404999 NA other upstream 563410 13140694 ~ 13141115 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 812632 13389916 ~ 13392833 (-)

Expression


Co-expression Network