G404682


Basic Information

Item Value
gene id G404682
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12576532 ~ 12578806 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480125
GCGTggtttctgtagtgtagtggttatcacGTTCGCCTAACACGCGAAAGGTCCCTGGTTCGAAACCAGGCAGAAACAAGCTGCCCCTTTTGAGCTTTGCTTTAATGCGTGTCCACTTGTCATCTCTGTAGGATCAGGGCCTCTAGGAACAGCCAGAAAGTGAAACCCTGAGCGTGACTGGAACAGTTTCTTCTGCAGAGTAGTAGTCGTCATGTTCACCCACATGCGAAAAAGGTCATCGGGCCTAAAGCGGGTGGGAACGGTTTCCCCTCCTTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480125 True 278 lncRNA 0.51 2 12576532 12578806

Neighbor

gene id symbol gene type direction distance location
styk1a LOC108273367 coding downstream 94390 12465737 ~ 12482142 (-)
zgc:194578 LOC108273361 coding downstream 114176 12447738 ~ 12462356 (-)
si:ch211-232m10.6 LOC108272566,LOC108439912,LOC101076817 coding downstream 136185 12434972 ~ 12440347 (-)
ccdc106b cc106,LOC108273335 coding downstream 149143 12420503 ~ 12427389 (-)
u2af2b u2af2,u2af2b,LOC103026862,LOC107656609,LOC108439900 coding downstream 161740 12399540 ~ 12414792 (-)
si:ch211-288g17.3 LOC108273223 coding upstream 58044 12636850 ~ 12649319 (-)
kmt2ba LOC108272954,LOC107701550 coding upstream 108956 12687762 ~ 12724515 (-)
ndufv1 ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 coding upstream 182906 12761712 ~ 12770681 (-)
hcn3 hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422 coding upstream 193115 12771921 ~ 12783866 (-)
si:ch211-81a5.8 NA coding upstream 211990 12790796 ~ 12793315 (-)
G404667 NA non-coding downstream 61322 12514471 ~ 12515210 (-)
G404421 NA non-coding downstream 301030 12275268 ~ 12275502 (-)
G404282 NA non-coding downstream 450692 12125457 ~ 12125840 (-)
G404243 NA non-coding downstream 576022 12000266 ~ 12000510 (-)
G404241 NA non-coding downstream 579062 11997070 ~ 11997470 (-)
G404687 NA non-coding upstream 10466 12589272 ~ 12591533 (-)
G404692 NA non-coding upstream 22826 12601632 ~ 12635213 (-)
LOC113535190 NA non-coding upstream 84205 12663011 ~ 12677646 (-)
G404719 NA non-coding upstream 107384 12686190 ~ 12686468 (-)
G404799 NA non-coding upstream 238778 12817584 ~ 12942105 (-)
trnav-aac_24 NA other downstream 1717 12574740 ~ 12574815 (-)
trnav-cac_24 NA other downstream 2861 12573599 ~ 12573671 (-)
trnav-cac_23 NA other downstream 4866 12571593 ~ 12571666 (-)
trnav-cac_22 NA other downstream 5996 12570464 ~ 12570536 (-)
fam131ba fam131ba,LOC108272563,LOC108439905 other downstream 22772 12515316 ~ 12553760 (-)
trnav-cac_26 NA other upstream 774 12579580 ~ 12579651 (-)
G404999 NA other upstream 561888 13140694 ~ 13141115 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 811110 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 963197 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 977350 13556156 ~ 13558631 (-)

Expression


Co-expression Network